WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000109460 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000109460 (Len=2259) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000109460, Len=2259): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEPSPARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQ 80
WD40-rpts
Query 81 ICQRIGPMLDKEVPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGPPPSLVEIHRGRQLTG 160
WD40-rpts (_________________WD 1________________)
Query 161 CSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYEN 240
WD40-rpts (_________________WD 2________________) (_________________WD 3_
Query 241 TLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEK 320
WD40-rpts _______________)(____________________WD 4____________________) (________
Query 321 PRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQL 400
WD40-rpts __________WD 5_________________)(___________________WD 6___________________)(___
Query 401 EWRSILLDMSARISGDTSSEEERFMKPKVTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
WD40-rpts _______________________WD 7__________________________) (_________________WD 8_
Query 481 SRIMLSAGHDGSIFIWDITKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 560
WD40-rpts ________________) (__________________WD 9__________________)
Query 561 HTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENSADEHLVPQLGYVATSDGEVIEQIISL 640
WD40-rpts
Query 641 HTNDSGDASPESSVLDGMIRQLQQQQDQRLGVDQDGTANGLPSGEGTPRRGSFRRLSLDIQSPPNIGLRRSGQVEGVRQM 720
WD40-rpts
Query 721 HQNAPRSQIATERDLQAWKRRVVVPEAPPGMFRRLEDIRIERGEEERNLYVIGRKKKTFQVPQKSNSMVLVSQSRQRTCR 800
WD40-rpts
Query 801 RKYANYSRRNADQCELSSGNESSGSVRHETSYDQSEGSCSSEDDEWRNDRRSGSDSDSSSDSSSQYSDWTADTGINLQPP 880
WD40-rpts
Query 881 LRMSCRRRVTRFCSTSEDEMSMENISPPKRRRKRRKESKPKRESLRRMTPAELANMEHLYEFHPPVWITDTTLRKSPFVP 960
WD40-rpts
Query 961 QMGDEVMYFRQGHEAYIEAVRRNNIYELNPHKEPWRKMDLRDQELVKIVGLRYEVGPPTLCCLKLAFIDPATGRLTDKSF 1040
WD40-rpts
Query 1041 SIRYHDMPDVIDFLVLRQFYDEARQRNWQPCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTETEKLSPW 1120
WD40-rpts
Query 1121 DMEPIPDNVDPPEELGASISVTSDELEKLLYKPQEGEWGQRSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCT 1200
WD40-rpts
Query 1201 VVAYPTDLYTIRMRLVNRFYRRLSALIWEVRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQDCTNISELCNTSDND 1280
WD40-rpts
Query 1281 EDDSADDLDDSDLPKTSSGRRKVHNWKRRSRASGCIESDWRRQCKALLILIFQCEDSEPFRQPVDLDEYPDYRDIIDTPM 1360
WD40-rpts
Query 1361 DFGTVRETLEAGNYDSPVEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISFDFKIGQKFKEKLRRSQRF 1440
WD40-rpts
Query 1441 KQRQNCNGAVPGDRRRRNVKQKQFKSQTKVIPQLMCPPSQSTSSKVPLSATRKTSAGVSSGFTSGDSSDSAGSLERVRRQ 1520
WD40-rpts
Query 1521 RPEVLRSGSVLFGSEMEDFLATSSSSSASNSSEESKASPGARESSLRSGVLRGSNLGVTRTRAARRKAGSVSLENGCGRK 1600
WD40-rpts
Query 1601 ATRKRVYLSDSDNNSVETDENLKNRKCGSSRKVLRKCAAVAASKIKLMSDAEDSSSESPCSGRKLPHRNASAVARKKLLH 1680
WD40-rpts
Query 1681 NSDDQSLKSETEELKDQNQSLLISGPHSVHNSISDSESDSDLRATRKTWNANGCTSHTAATCKTKSRPIESSEEDSRCHG 1760
WD40-rpts
Query 1761 SDHGPSSTGDPSTSGQKLRADSISEEADSEPESSVLCKNTHLCKKAKILSDSEDCEEKCGERRGPEVEGSPVSEALREAI 1840
WD40-rpts
Query 1841 LAPQCLSHRGSETDVDSDGGAVREKSYSNENGSVSLENGQRRKVSRKSSSDKESNLQVTQKSPKDRSSPSRITQRASVAT 1920
WD40-rpts
Query 1921 DKMKLTSDAEDLSLESVCTRSKRRRKKPARFACTPAKTALSSEEKHAHCEVPEAQPACRNKLPEPEHQDSAENPSQAASA 2000
WD40-rpts
Query 2001 DLNSGGGSSFEQRKSIQSRQMGAVCVRPPPKTQSSSAGLSQENARSQTLDSETSLPSESVLTQKATVESNFEEELNYGLR 2080
WD40-rpts
Query 2081 RWNGRRLRTYGKAPLSRTAQVTPSLQASAEVGVKRRRMHPEVDGEDVPGQMGSSGCGPDTSPKASDLGSVTDSDVDCTDN 2160
WD40-rpts
Query 2161 TQTQRKKKRKGKARVLSKGKPSSSNSPKTARHPRQSKGPRLNVDDNDWEDLDYAKAKGVVRLSKIQTRNQGRRTVRYHDG 2240
WD40-rpts
Query 2241 EDDRSIESALELTDRTLRP 2259
WD40-rpts
 9 WD40-repeats found in QUERY=ENSMUSP00000109460 (Len=2259): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 86-124 4.35 294.22 0.00673 20.0% 28.39 WD 2: Seg 7 176-214 8.68 473.14 2.6e-05 35.0% 47.89 WD 3: Seg 11 218-256 9.01 486.73 1.7e-05 30.0% 55.00 WD 4: Seg 15 257-302 8.03 446.41 6.0e-05 42.5% 53.90 WD 5: Seg 19 312-352 5.20 329.65 0.00225 30.0% 48.99 WD 6: Seg 23 353-396 9.51 507.48 9.0e-06 42.5% 54.10 WD 7: Seg 27 397-454 5.61 346.41 0.00133 30.0% 46.08 WD 8: Seg 31 458-497 8.02 446.14 6.0e-05 35.0% 52.38 WD 9: Seg 35 503-544 4.44 298.26 0.00594 15.0% 44.35Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 86-124 GP----ML---------DKEVPP--SISR---------V--TSL-LGA-GRQ----SLLRTAKDCRHTVWK WD 2 176-214 -I----KM---------HRRILG--HLSA---------V--YCVAFDR-TGH----RIFTGSDDCLVKIWS WD 3 218-256 -G----RL---------LSTLRG--HSAE---------I--SDMAVNY-ENT----LIAAGSCDKIIRVWC WD 4 257-302 LR----TC-------APVAVLQG--HTGS---------I--TSLQFSP-MAKGPQRYMVSTGADGTVCFWQ WD 5 312-352 -P----RP---------LKFTEK--PRPG---------VQMLCSSFSV-GGM----FLATGSTDHVIRMYF WD 6 353-396 LGFDAPEK---------IAELES--HTDK---------V--DSIQFCN-NGD----RFLSGSRDGTARIWR WD 7 397-454 FE----QLEWRSILLDMSARISG--DTSSEEERFMKPKV--TMIAWNQ-DDS----TVVTAVNDHVLKVWS WD 8 458-497 -G----QL---------LHNLLG--HADE---------V--FVLETHPFDSR----IMLSAGHDGSIFIWD WD 9 503-544 KM----KH---------YFNMIEGQGHGA---------V--FDCKFSQ-DGQ----HFACTDSHGHLLIFG WD40 Template TG----EC---------LRTLSG--HTSG---------V--TSVSFSP-DGK----RLVSGSEDGTIKVWD |
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