Input parameters:

  Query = ENSMUSP00000109414 (Len=1341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109414, Len=1341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LKRVFSLLEKSWLGAPIQFAWQKSSGNYLAVTGADYIVKIFDRHGQKRSEISLPGNCVTMDWDKDGDILAVIAEKSSCIY 80  
WD40-rpts      (__________________WD 1__________________)(__________________WD 2_______________

Query       81 LWDANTNKTSQLDNGMRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLALGGEDK 160 
WD40-rpts      __)   (_________________WD 3________________)   (________________WD 4___________

Query      161 MITVSNQEGDTIRQTPVKSEPSDIKFSMSKTDERISSAENTISAVVGKKMLFLFHLNEPDNPVDLEFQQAYGNIVCYSWY 240 
WD40-rpts      _____)   (_________________WD 5________________)       (___________________WD 6_

Query      241 GDGYIMIGFSRGTFLAISTHFPEVGQEIFKARDHKDNLTSVALSQTLNKAATCGDNCIKIHDLTELRDMYAIINLDDENK 320 
WD40-rpts      __________________)     (________________WD 7________________)(_________________

Query      321 GLGTLSWTDDGQLLALSTQRGSLHVFLTKLPILGDACHTRIAYLTSLLEVTVANLIEGEPPITVSVDVEPTFVAVGLYHL 400 
WD40-rpts      ___WD 8___________________)                                                     

Query      401 AVGMNNRAWFYVLGENVVKKLKDVEYLGTVASICLHSDYAAALFEGKIQLHLIENEMLDAQEERETRLFPAVDDKCRILC 480 
WD40-rpts                                                                    (_________________

Query      481 HALTSDFLIYGTDTGIIHYFFIEDWQFVNDYRHPVGVKKLFPDPNGTRLVFIDEKSDGFVYCPVNDATYEIPDFSPTIKG 560 
WD40-rpts      WD 9________________) (_________________WD10_________________)                  

Query      561 VLWENWPMDKGVFIAYDDDKVYTYAFHKDTIQGSKVILAGSTKLPFSHKPLLLYNGELTCQTQSGKINSIYLSTHSFLGS 640 
WD40-rpts                                                                                      

Query      641 MKDTEPTDLRQMLTQTLLLKRFSDAWDICKMLNDRTSWSELAKACLHHMEVEFAIRVSRTMGDVGTVMSLEQIKGIEDYN 720 
WD40-rpts                                                                                      

Query      721 LLAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDLQHWDSALQLAKRLAPDQIPFISKEYAIQLEFTGDYVNALAHYEK 800 
WD40-rpts                                                                                      

Query      801 GITGDNKEHDEVCLAGVAQMSIRMGDIRRGANQALKHPSRVLKRDCGAILENMKQFSEAAQLYEKGQYYDRAASVYIRCK 880 
WD40-rpts                                                                                      

Query      881 NWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENAKQWNSVIRIYLDHLNNPEKAVSIVRETQSLDGAKMVARF 960 
WD40-rpts                                                                                      

Query      961 FLQLGDYGSAIQFLVLSKCNNEAFTLAQQHNKMEIYADIIGAEDTTNEDYQSIALYFEGEKRHFQAGKFFLLCGQYSRAL 1040
WD40-rpts                                                                                      

Query     1041 KHFLKCPSSEDNVAIEMAIETVGQAKDELLTNQLIDHLMGESDGMPKDAKYLFRLYMALKQYREAARTAIIIAREEQSAG 1120
WD40-rpts                                                                                      

Query     1121 NYRNAHDVLFSMYAELKAQKIKIPSEMATNLMILHSYILVKIHVKSGDHMKGARMLIRVANNISKFPSHIVPILTSTVIE 1200
WD40-rpts                                                                                      

Query     1201 CHRAGLKNSAFSFAAMLMRPEYRNKIDAKYKKKIEAMVRRPDTSETEEATTPCPFCQFLLPECELLCPGCKNNIPYCIAT 1280
WD40-rpts                                                                                      

Query     1281 GRHMLKDDWTMCPHCGFPALYSEFKILLNSESTCPMCSERLNSSQLKKITDCSQYLRTEME 1341
WD40-rpts                                                                   

10 WD40-repeats found in QUERY=ENSMUSP00000109414 (Len=1341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       5.14  326.91  0.00244       17.5%     50.38
  WD 2:  Seg  5    43-83       4.51  301.03  0.00545       20.0%     55.46
  WD 3:  Seg  9    87-125      6.25  373.00  0.00058       15.0%     51.80
  WD 4:  Seg 13   129-166      5.07  324.24  0.00265       25.0%     55.29
  WD 5:  Seg 17   170-208      3.27  249.70  0.02654       15.0%     28.43
  WD 6:  Seg 21   216-259      3.43  256.45  0.02158       12.5%     44.77
  WD 7:  Seg 25   265-302      4.35  294.24  0.00673       25.0%     53.77
  WD 8:  Seg 29   303-347      5.84  355.92  0.00099       22.5%     55.55
  WD 9:  Seg 43   463-501      3.44  256.86  0.02131       12.5%     49.00
  WD10:  Seg 47   503-542      5.18  328.77  0.00231       25.0%     53.07

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     LKR-----VFSLLEKSWLGAPIQFAWQKSSGNYLAVTGADYI-VKIFD
   WD 2   43-83     RHG-----Q--KRSEISLPGNCVTMDWDKDGDILAVIAEKSSCIYLWD
   WD 3   87-125    -NK-----T--SQLDNGMRDQMSFLLWSKIGSFLAVGTIKGN-LLIYN
   WD 4  129-166    -SR-----K--IPVLGKHTKKITCGCWNSEN-LLALGGEDKM-ITVSN
   WD 5  170-208    -DT-----I--RQTPVKSEPSDIKFSMSKTDERISSAENTIS-AVVGK
   WD 6  216-259    LNE-PDNPV--DLEFQQAYGNIVCYSWYGDGYIMIGFSRGTF-LAIST
   WD 7  265-302    -GQ-----E--IFKARDHKDNLTSVALSQTLNKAATCG-DNC-IKIHD
   WD 8  303-347    LTELRDMYA--IINLDDENKGLGTLSWTDDGQLLALSTQRGS-LHVFL
   WD 9  463-501    -ER-----E--TRLFPAVDDKCRILCHALTSDFLIYGTDTGI-IHYFF
   WD10  503-542    EDW-----Q--FVNDYRHPVGVKKLFPDPNGTRLVFIDEKSD-GFVYC

   WD40 Template    TGE-----C--LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD