Input parameters:

  Query = ENSMUSP00000109340 (Len=537)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109340, Len=537):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMCASPRPFRRVGSAGAAALAAGGAGGAERRGRPAPLQDETLGVASVPSQWRSVQGIRGETKSCQTAGIATAESSAQAR 80  
WD40-rpts                                                                                      

Query       81 THADAQVQTEAPEEPAAMAPVSQYDTLRLEAFLRRVEAMVIRELNNNWQSHAFDGYEVNWTEQQQTVSCLHTLVYPLAQG 160 
WD40-rpts                                                                                (_____

Query      161 QGLHVTGISWNSTGSVLACAYGRLDDGDWSTLKSYVCTWNLDRQGLNPQQPSVVVEVPSAVMCLAFHPTQPSHIAGGLYS 240 
WD40-rpts      _______________WD 1____________________)(_____________________WD 2______________

Query      241 GEVLVWDMSRPEDPLLWRTGLTDDTHTDPVYQVLWLPEPRHSHRFQVLSAATDGKVLLWRGSGAGQLRLTKGFALAVQQL 320 
WD40-rpts      ______)           (__________________WD 3__________________)   (________________

Query      321 PRSTKLKKPPRGETEVGVTSVAFSSFDSSLFVLGTEGGFPLKCSLASEVAALTRMPSSVPLRAPVQFTFSPHGGPVYSVS 400 
WD40-rpts      _WD 4________________)                                        (_________________

Query      401 CSPFHRNLFLSAGTDGHVHLYSMLQAQPLTSLQLSHKYLFAVRWSPVRPLVFAAASGEGDVQLFDLQKSSQKPTVSITQT 480 
WD40-rpts      WD 5_________________)   (_________________WD 6_________________)(______________

Query      481 QDGSPVYCLEFNSQQTQLLAAGDAKGMVKVWQLSTAFTEQGPREVEDLDQLEAEITT 537 
WD40-rpts      _______WD 7____________________)                         

7 WD40-repeats found in QUERY=ENSMUSP00000109340 (Len=537):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   155-200      2.91  234.92  0.04167       17.5%     41.41
  WD 2:  Seg  7   201-247      3.94  277.34  0.01134       22.5%     46.90
  WD 3:  Seg 12   259-300      5.51  342.17  0.00152       30.0%     42.34
  WD 4:  Seg 15   304-342      3.02  239.22  0.03656       17.5%     11.93
  WD 5:  Seg 20   383-422      5.23  330.63  0.00218       30.0%     54.90
  WD 6:  Seg 24   426-465      4.65  306.68  0.00458       20.0%     54.22
  WD 7:  Seg 28   466-512      4.06  282.23  0.00975       25.0%     59.09

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  155-200    ----------------YPLAQGQGLHVTGISWNS-TGS-----VLACAYGRLDDGDWSTLKSYVCTWN
   WD 2  201-247    LDRQGLNPQ------QPSVVVEVPSAVMCLAFHPTQPS-----HIAGGLY----------SGEVLVWD
   WD 3  259-300    TG---------------LTDDTHTDPVYQVLWLP-EPRHSHRFQVLSAAT----------DGKVLLWR
   WD 4  304-342    -A------G------QLRLTKGFALAVQQLPRST-KLK-----KPPRGET----------EVGVTSVA
   WD 5  383-422    -A------P------VQFTFSPHGGPVYSVSCSPFHRN-----LFLSAGT----------DGHVHLYS
   WD 6  426-465    -A------Q------PLTSLQLSHKYLFAVRWSPVRPL-----VFAAASG----------EGDVQLFD
   WD 7  466-512    LQ------KSSQKPTVSITQTQDGSPVYCLEFNSQQTQ-----LLAAGDA----------KGMVKVWQ

   WD40 Template    TG------E------CLRTLSGHTSGVTSVSFSP-DGK-----RLVSGSE----------DGTIKVWD