Input parameters:

  Query = ENSMUSP00000109143 (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109143, Len=410):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYWPSIYHTMASPCSAMAYHHDS 80  
WD40-rpts                  (_________________WD 1_________________)(___________________WD 2____

Query       81 RRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLAAEWVISTGHDKCVSWMCTRSGNMLGRHFFSSWASC 160 
WD40-rpts      _______________)       (_________________WD 3________________)  (_______________

Query      161 LQYDLDTQHAFVGDYSGQITLLKLEQNTCSVITTLKGHEGSIACLWWDPIQRLLFSGASDNSVIMWDIGGRKGRTLLLQG 240 
WD40-rpts      __WD 4________________)     (_________________WD 5________________)(____________

Query      241 HHDRVQSLCYLQLTRQLVSCSADGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQA 320 
WD40-rpts      _______WD 6__________________)   (________________WD 7________________)    (____

Query      321 VCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRVVKIWDMTPVVG 400 
WD40-rpts      ____________WD 8_______________)   (_________________WD 9________________)      

Query      401 CSLATGFSPH 410 
WD40-rpts                

9 WD40-repeats found in QUERY=ENSMUSP00000109143 (Len=410):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       9.03  487.69  1.7e-05       32.5%     54.12
  WD 2:  Seg  5    53-96       7.44  421.95  0.00013       12.5%     55.65
  WD 3:  Seg  9   104-142      8.37  460.51  3.9e-05       17.5%     52.53
  WD 4:  Seg 13   145-183      7.69  432.15  9.3e-05       12.5%     54.83
  WD 5:  Seg 17   189-227      9.33  500.04  1.1e-05       27.5%     56.53
  WD 6:  Seg 21   228-270      8.96  484.96  1.8e-05       37.5%     57.41
  WD 7:  Seg 25   274-311      5.13  326.42  0.00248        5.0%     48.04
  WD 8:  Seg 29   316-352      5.11  325.69  0.00254       17.5%     27.60
  WD 9:  Seg 33   356-394      8.81  478.58  2.2e-05       20.0%     57.20

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     RPV----LLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWL
   WD 2   53-96     KRDSGQYWPSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFH
   WD 3  104-142    -MN----FIKTYPAHQNRVSAIIFSLAAEWVISTGHDKCVSWMC
   WD 4  145-183    -SG----NMLGRHFFSSWASCLQYDLDTQHAFVGDYSGQITLLK
   WD 5  189-227    -CS----VITTLKGHEGSIACLWWDPIQRLLFSGASDNSVIMWD
   WD 6  228-270    IGG-RKGRTLLLQGHHDRVQSLCYLQLTRQLVSCSADGGIAVWN
   WD 7  274-311    -SR----EEAPQWLESDSC-QKCEQPFFWNIKQMWDTKTLGLRQ
   WD 8  316-352    --K----CGQAVCGKCSSKRS-SYPVMGFEFQVRVCDSCYDSIK
   WD 9  356-394    -RT----SLATFHEGKHNISHMSMDIARGLMVTCGTDRVVKIWD

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD