Input parameters:

  Query = ENSMUSP00000109063 (Len=356)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109063, Len=356):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKSLLLRYYPPGIMLEYEKGGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASRTKQVRLLVQRLQEKLRQHSDH 80  
WD40-rpts                           (____________________WD 1____________________)             

Query       81 NFYLFKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHTLEGHKNVVYAIAFNNPYGKVHTLIGHCAEIS 160 
WD40-rpts       (_________________WD 2________________)                         (______________

Query      161 SALFNWDCSLILTGSMDKTCMLWDATSGKYVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCVTKLEGHE 240 
WD40-rpts      ___WD 3________________)   (_________________WD 4________________)   (__________

Query      241 GEISKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVITARTTPAGYGVDPRALLWSRAV 320 
WD40-rpts      _______WD 5________________)   (____________________WD 6____________________)   

Query      321 GNSDQELELQRASEPMSSASFHATYPWNSLSFTLQT 356 
WD40-rpts                                          

6 WD40-repeats found in QUERY=ENSMUSP00000109063 (Len=356):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-67       5.55  343.78  0.00145       25.0%     48.46
  WD 2:  Seg  8    82-120      9.42  503.67  1.0e-05       32.5%     52.83
  WD 3:  Seg 14   146-184      9.75  517.34  6.6e-06       32.5%     53.41
  WD 4:  Seg 18   188-226      9.86  521.98  5.7e-06       32.5%     54.46
  WD 5:  Seg 22   230-268     10.76  559.31  1.8e-06       40.0%     55.33
  WD 6:  Seg 26   272-317      8.17  451.99  5.0e-05       30.0%     55.65

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-67     GGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASR-------TKQVRLLV
   WD 2   82-120    -FYL------FKVLRAHILPLTNVALNKAGSCFITGSY-------DRTCKVWD
   WD 3  146-184    -YGK------VHTLIGHCAEISSALFNWDCSLILTGSM-------DKTCMLWD
   WD 4  188-226    -GKY------VATLTGHDDEILDSCFDYTGKLIATASA-------DGTARVYN
   WD 5  230-268    -RKC------VTKLEGHEGEISKISFNPQGNRLLTGSS-------DKTARIWD
   WD 6  272-317    -GQC------LQVLEGHTDEIFSCAFNYKGNIVITARTTPAGYGVDPRALLWS

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFSPDGKRLVSGSE-------DGTIKVWD