Input parameters:

  Query = ENSMUSP00000109060 (Len=309)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109060, Len=309):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LKLLSLWLAYFTGIMLEYEKGGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASRTKQVRLLVQRLQEKLRQHSDHN 80  
WD40-rpts                          (____________________WD 1____________________)              

Query       81 FYLFKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHTLEGHKNVVYAIAFNNPYGKVHTLIGHCAEISS 160 
WD40-rpts      (_________________WD 2________________)                         (_______________

Query      161 ALFNWDCSLILTGSMDKTCMLWDATSGKYVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCVTKLEGHEG 240 
WD40-rpts      __WD 3________________)   (_________________WD 4________________)   (___________

Query      241 EISKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIWR 309 
WD40-rpts      ______WD 5________________)   (_________________WD 6________________)

6 WD40-repeats found in QUERY=ENSMUSP00000109060 (Len=309):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-66       7.98  444.20  6.4e-05       25.0%     53.01
  WD 2:  Seg  8    81-119      9.47  506.00  9.4e-06       32.5%     51.49
  WD 3:  Seg 14   145-183      9.86  522.03  5.7e-06       32.5%     53.44
  WD 4:  Seg 18   187-225      9.97  526.50  5.0e-06       32.5%     53.74
  WD 5:  Seg 22   229-267     10.83  562.05  1.7e-06       40.0%     55.78
  WD 6:  Seg 26   271-309     10.17  534.63  3.9e-06       35.0%     49.05

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-66     GGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASRTKQVRLLV
   WD 2   81-119    -FYL------FKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWD
   WD 3  145-183    -YGK------VHTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWD
   WD 4  187-225    -GKY------VATLTGHDDEILDSCFDYTGKLIATASADGTARVYN
   WD 5  229-267    -RKC------VTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWD
   WD 6  271-309    -GQC------LQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIWR

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD