Input parameters:

  Query = ENSMUSP00000108815 (Len=623)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108815, Len=623):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEKHDMPNRHEISPGHDGAWNDS 80  
WD40-rpts                                                                                      

Query       81 QLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQ 160 
WD40-rpts                                                                                      

Query      161 TLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI 240 
WD40-rpts                                                                                      

Query      241 EVIVDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSDAARRRSVSSIPVPQDIMDTHPAS 320 
WD40-rpts            (________________WD 1________________)   (__________________WD 2__________

Query      321 GKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAA 400 
WD40-rpts      _______)_________________WD 3________________)     (_________________WD 4_______

Query      401 SNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS 480 
WD40-rpts      _________)   (_________________WD 5________________)   (_______________WD 6_____

Query      481 GHFDKKIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSP 560 
WD40-rpts      __________)  (_________________WD 7________________)   (___________________WD 8_

Query      561 DGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLWAQP 623 
WD40-rpts      _________________)   (_________________WD 9_________________)  

9 WD40-repeats found in QUERY=ENSMUSP00000108815 (Len=623):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   247-284      4.61  305.25  0.00478       17.5%     22.33
  WD 2:  Seg  5   288-328      5.92  359.18  0.00090       17.5%     26.79
  WD 3:  Seg  8   328-366      8.85  480.43  2.1e-05       27.5%     48.01
  WD 4:  Seg 12   372-410      9.11  491.13  1.5e-05       32.5%     51.56
  WD 5:  Seg 16   414-452     10.28  539.28  3.4e-06       45.0%     53.59
  WD 6:  Seg 20   456-491      6.50  383.29  0.00042       22.5%     44.60
  WD 7:  Seg 24   494-532      7.40  420.16  0.00014       25.0%     53.16
  WD 8:  Seg 28   536-578      8.04  446.69  5.9e-05       37.5%     53.93
  WD 9:  Seg 32   582-621      8.05  447.37  5.8e-05       27.5%     51.35

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  247-284    ---TSDHT-EET----SPVRAVSRAATKRLSQPAGGLLDSITNIFG
   WD 2  288-328    SPLLGHHS-SDA----ARRRSVSSIPVPQDIMDTHPASGKDVRVPT
   WD 3  328-366    TTASYVFD-AHD----GEVNAVQFSPGSRLL--ATGGMDRRVKLWE
   WD 4  372-410    CEFKGSLS-GSN----AGITSIEFDSAGAYL--LAASNDFASRIWT
   WD 5  414-452    YRLRHTLT-GHS----GKVLSAKFLLDNARI--VSGSHDRTLKLWD
   WD 6  456-491    KVCIKTVF-AGS----S---CNDIVCTEQCV--MSGHFDKKIRFWD
   WD 7  494-532    SESVVREM-ELL----GKITALDLNPERTEL--LSCSRDDLLKVID
   WD 8  536-578    NAVKQTFS-APGFKCGSDWTRVVFSPDGSYV--AAGSAEGSLYVWS
   WD 9  582-621    GKVEKVLSKQHS----SSINAVAWAPSGLHV--VSVDKGSRAVLWA

   WD40 Template    GECLRTLS-GHT----SGVTSVSFSPDGKRL--VSGSEDGTIKVWD