Input parameters:

  Query = ENSMUSP00000108813 (Len=605)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108813, Len=605):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEKHDMPNRHEISPGHDGAWNDS 80  
WD40-rpts                                                                                      

Query       81 QLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQ 160 
WD40-rpts                                                                                      

Query      161 TLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI 240 
WD40-rpts                                                                                      

Query      241 EVIVDETSDHTEETSPVRAVSRAATRRSVSSIPVPQDIMDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLAT 320 
WD40-rpts                                  (_____________________________WD 1__________________

Query      321 GGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLD 400 
WD40-rpts      __________)     (_________________WD 2________________)   (_________________WD 3

Query      401 NARIVSGSHDRTLKLWDLRSKVCEEMQSLCVLMVFGFLSGIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVV 480 
WD40-rpts      ________________)          (____________________WD 4____________________)  (____

Query      481 REMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWS 560 
WD40-rpts      _____________WD 5________________)   (___________________WD 6__________________)

Query      561 VLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLWAQP 605 
WD40-rpts         (_________________WD 7_________________)  

7 WD40-repeats found in QUERY=ENSMUSP00000108813 (Len=605):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   269-331      7.61  428.92  0.00010       27.5%     47.31
  WD 2:  Seg  6   337-375      9.28  498.19  1.2e-05       32.5%     52.15
  WD 3:  Seg 10   379-417     10.52  549.42  2.4e-06       45.0%     52.87
  WD 4:  Seg 14   428-473      6.80  395.44  0.00029       27.5%     48.22
  WD 5:  Seg 18   476-514      7.38  419.61  0.00014       25.0%     52.11
  WD 6:  Seg 22   518-560      8.27  456.47  4.4e-05       37.5%     54.71
  WD 7:  Seg 26   564-603      8.20  453.56  4.8e-05       27.5%     49.15

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  269-331    VSSIPVPQDIMDTHPASGKDVRVPTTASYVFD-AHD----GEVNAV-------QFSPGSRLLATGGMDRRVKLWE
   WD 2  337-375    -CE-----------------------FKGSLS-GSN----AGITSI-------EFDSAGAYLLAASNDFASRIWT
   WD 3  379-417    -YR-----------------------LRHTLT-GHS----GKVLSA-------KFLLDNARIVSGSHDRTLKLWD
   WD 4  428-473    -SL-----------------------CVLMVF-GFL----SGIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWD
   WD 5  476-514    -SE-----------------------SVVREM-ELL----GKITAL-------DLNPERTELLSCSRDDLLKVID
   WD 6  518-560    -NA-----------------------VKQTFS-APGFKCGSDWTRV-------VFSPDGSYVAAGSAEGSLYVWS
   WD 7  564-603    -GK-----------------------VEKVLSKQHS----SSINAV-------AWAPSGLHVVSVDKGSRAVLWA

   WD40 Template    TGE-----------------------CLRTLS-GHT----SGVTSV-------SFSPDGKRLVSGSEDGTIKVWD