Input parameters:

  Query = ENSMUSP00000108811 (Len=588)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108811, Len=588):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEKHDMPNRHEISPGHDGAWNDS 80  
WD40-rpts                                                                                      

Query       81 QLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQ 160 
WD40-rpts                                                                                      

Query      161 TLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI 240 
WD40-rpts                                                                                      

Query      241 EVIVDETSDHTEETSPVRAVSRAATRRSVSSIPVPQDIMDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLAT 320 
WD40-rpts          (________________WD 1________________)          (_________________WD 2______

Query      321 GGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLD 400 
WD40-rpts      __________)     (_________________WD 3________________)   (_________________WD 4

Query      401 NARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREMELLGKITALDLNPE 480 
WD40-rpts      ________________)   (_______________WD 5_______________)  (_________________WD 6

Query      481 RTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSS 560 
WD40-rpts      ________________)   (___________________WD 7__________________)   (_____________

Query      561 INAVAWAPSGLHVVSVDKGSRAVLWAQP 588 
WD40-rpts      ____WD 8_________________)  

8 WD40-repeats found in QUERY=ENSMUSP00000108811 (Len=588):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   245-282      6.24  372.26  0.00060       17.5%     20.17
  WD 2:  Seg  3   293-331      7.82  437.84  7.8e-05       27.5%     48.38
  WD 3:  Seg  7   337-375      9.25  496.70  1.3e-05       32.5%     52.41
  WD 4:  Seg 11   379-417     10.51  548.72  2.5e-06       45.0%     51.94
  WD 5:  Seg 15   421-456      6.66  389.74  0.00035       22.5%     45.84
  WD 6:  Seg 19   459-497      7.48  423.51  0.00012       25.0%     52.72
  WD 7:  Seg 23   501-543      8.18  452.51  5.0e-05       37.5%     56.34
  WD 8:  Seg 27   547-586      8.19  452.77  4.9e-05       27.5%     50.14

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  245-282    -DETSDHT-EET----SPVRAVSRAATRRSVSSIPVPQDIMDTH
   WD 2  293-331    TTASYVFD-AHD----GEVNAVQFSPGSRLLATGGMDRRVKLWE
   WD 3  337-375    CEFKGSLS-GSN----AGITSIEFDSAGAYLLAASNDFASRIWT
   WD 4  379-417    YRLRHTLT-GHS----GKVLSAKFLLDNARIVSGSHDRTLKLWD
   WD 5  421-456    KVCIKTVF-AGS----S---CNDIVCTEQCVMSGHFDKKIRFWD
   WD 6  459-497    SESVVREM-ELL----GKITALDLNPERTELLSCSRDDLLKVID
   WD 7  501-543    NAVKQTFS-APGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWS
   WD 8  547-586    GKVEKVLSKQHS----SSINAVAWAPSGLHVVSVDKGSRAVLWA

   WD40 Template    GECLRTLS-GHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD