Input parameters:

  Query = ENSMUSP00000108700 (Len=389)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108700, Len=389):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTC 80  
WD40-rpts                                                                                      

Query       81 CLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYKDGL 160 
WD40-rpts                              (___________________WD 1__________________)   (_________

Query      161 LCTVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWP 240 
WD40-rpts      ________WD 2________________)   (_____________________WD 3_____________________)

Query      241 IGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRVIKTPEVANLALLGFGDVFALLFDNH 320 
WD40-rpts            (_________________WD 4_________________)(_________________WD 5____________

Query      321 YLYIMDLRTESLISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHC 389 
WD40-rpts      _____)                  (_________________WD 6_________________)     

6 WD40-repeats found in QUERY=ENSMUSP00000108700 (Len=389):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   105-147      5.42  338.34  0.00171       10.0%     21.96
  WD 2:  Seg  4   151-189      9.62  511.90  7.8e-06       37.5%     56.03
  WD 3:  Seg  8   193-240      8.42  462.63  3.6e-05       37.5%     52.90
  WD 4:  Seg 12   247-286      6.12  367.67  0.00069       30.0%     49.73
  WD 5:  Seg 16   287-326      6.47  381.93  0.00044       10.0%     51.06
  WD 6:  Seg 20   345-384      5.93  359.68  0.00088       17.5%     42.68

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  105-147    LGWQIDDSVQDSLHWKKVYLKA--I---------LRM-KQLEDHEAFETSSLIGH
   WD 2  151-189    -VYALYYK---DGLLCTVFSVD--Y---------SDE-LDILVSGSADFAVKVWA
   WD 3  193-240    -GTCLNTL---TGHTEWVTKVV--LQKCKVKSLLHSP-GDYILLSADKYEIKIWP
   WD 4  247-286    -CKCLKTL---SVSEDRSICLQPRL---------HFD-GKYIVCSSAL-GLYQWD
   WD 5  287-326    FASYDILR---VIKTPEVANLA--L---------LGF-GDVFALLFDNHYLYIMD
   WD 6  345-384    -KRGSSFL---AGEASWLNGLD--G---------HNDTGLVFATSMPDHSIHLVL

   WD40 Template    TGECLRTL---SGHTSGVTSVS--F---------SPD-GKRLVSGSEDGTIKVWD