Input parameters:

  Query = ENSMUSP00000108698 (Len=359)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108698, Len=359):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTC 80  
WD40-rpts                                                                         (____________

Query       81 CLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYKDGL 160 
WD40-rpts      __________________WD 1_____________________________)(__________________WD 2_____

Query      161 LCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYSDELDI 240 
WD40-rpts      _____________)   (_______________WD 3______________)   (_________________WD 4___

Query      241 LVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSV 320 
WD40-rpts      _____________)   (_____________________WD 5_____________________)      (________

Query      321 SEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILR 359 
WD40-rpts      _________WD 6_________________)        

6 WD40-repeats found in QUERY=ENSMUSP00000108698 (Len=359):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    68-132      3.22  247.59  0.02831       10.0%     10.97
  WD 2:  Seg  5   133-174      6.43  380.43  0.00046       27.5%     50.19
  WD 3:  Seg  9   178-212      7.44  422.07  0.00013       30.0%     46.92
  WD 4:  Seg 13   216-254     10.05  529.91  4.5e-06       42.5%     50.69
  WD 5:  Seg 17   258-305      8.33  458.77  4.1e-05       37.5%     54.48
  WD 6:  Seg 21   312-351      6.05  364.74  0.00076       30.0%     51.93

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   68-132    LLK----WLDPQTLLTCCLVSKQ--WNKVISACTEVWQTACKNLGWQIDDSVQ---------DSLHWKKVYLKAILRMKQ
   WD 2  133-174    LEDHEAFETSSLIGHSARVYALY--Y-------------------------KD---------G--LLCTGSDDLSAKLWD
   WD 3  178-212    -GQ----CVYGIQTH----TCAA--V-------------------------KF---------DEQKLVTGSFDNTVACWE
   WD 4  216-254    -GA----RTQHFRGHTGAVFSVD--Y-------------------------SD---------ELDILVSGSADFAVKVWA
   WD 5  258-305    -GT----CLNTLTGHTEWVTKVV--L-------------------------QKCKVKSLLHSPGDYILLSADKYEIKIWP
   WD 6  312-351    -CK----CLKTLSVSEDRSICLQPRL-------------------------HF---------DGKYIVCSSAL-GLYQWD

   WD40 Template    TGE----CLRTLSGHTSGVTSVS--F-------------------------SP---------DGKRLVSGSEDGTIKVWD