Input parameters:

  Query = ENSMUSP00000108545 (Len=1242)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108545, Len=1242):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRAVLTWRDKAEQCIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSIIIW 80  
WD40-rpts      (_________________WD 1________________)   (_________________WD 2________________

Query       81 TSKLEGILKYTHNDSIQCVSYNPVTHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMANGIISIRN 160 
WD40-rpts      )(_________________WD 3________________)(_________________WD 4_________________)

Query      161 KNGEEKVKIERPGGSLSPIWSICWNPSSRWETIWMSRENEDAEDVIVNKYVQEIPSILKSTVYNSQGSEAEEEEQEEEDD 240 
WD40-rpts      (___________________WD 5___________________)                    (_______________

Query      241 SPRDGNSEEHNDILAVADWGQKLSFYQLSGKQIGKDRPLNFDPCCISYFTKGEYILVGGSDKQVSLFTKDGVRLGTVGEQ 320 
WD40-rpts      ____WD 6__________________)  (_________________WD 7________________)  (_________

Query      321 NSWVWTCRVKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCRELVKKIAIYKNR 400 
WD40-rpts      ________WD 8________________)                                                   

Query      401 LAIQLPEKILIYELYSEDSTDMHYRVKEKIVKKFECNLLVVCADHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIG 480 
WD40-rpts                                                                 (__________________WD

Query      481 GPAGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDTCLVYDIHTKELLFQEPNANSVAW 560 
WD40-rpts       9__________________) (_________________WD10_________________)                  

Query      561 NTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFKEAYQIACLG 640 
WD40-rpts                                                                                      

Query      641 VTDADWRELAMEALEGLEFETARKAFTRVQDLRYLELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHEN 720 
WD40-rpts                                                                                      

Query      721 LALDMYTDLCMFEYAKDFLGSGDPKETKMLITKQADWARNINEPKAAVEMYISAGEHAKAIEISGSHGWVDMLIDIARKL 800 
WD40-rpts                                                                                      

Query      801 DKAEREPLLMCACYFKKLDSPGYAAETYLKIGDLKSLVQLYVDTKRWDEAFALGEKHPEFKDDVYVPYAQWLAENDRFEE 880 
WD40-rpts                                                                                      

Query      881 AQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDMAQDPAQKDAMLDKFHHFQHLAELYHGYQTIHR 960 
WD40-rpts                                                                                      

Query      961 YTEEPFSFDLPETLFNISKFLLHSLTKATPLGISKVRNTLFTLAKQSKALGAYKLARHAYDKLRGLQIPARIQKSIELGT 1040
WD40-rpts                                                                                      

Query     1041 LTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFIFSASSYEVLHLVEFYLEEGITDEEAVALIDLEAPRHK 1120
WD40-rpts                                                                                      

Query     1121 REGKWRETSSNNSQTLKLDETMDSIGEDDPFTAKLSFEQGSSEFVPVVVNRSVLRSMSRRDVLIKRWPPPLQWQYFRSLL 1200
WD40-rpts                                                                                      

Query     1201 PDASITMCPSCFQMFHSEDYELLVLQHACCPYCRRRIDDTGP 1242
WD40-rpts                                                

10 WD40-repeats found in QUERY=ENSMUSP00000108545 (Len=1242):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       5.28  332.94  0.00203       20.0%     51.19
  WD 2:  Seg  5    43-81       9.22  495.41  1.3e-05       42.5%     54.60
  WD 3:  Seg  9    82-120      5.53  343.19  0.00148       20.0%     45.30
  WD 4:  Seg 12   121-160      6.90  399.78  0.00025       22.5%     56.49
  WD 5:  Seg 16   161-204      4.89  316.70  0.00335       12.5%     46.17
  WD 6:  Seg 21   225-267      3.33  252.17  0.02461        2.5%     44.14
  WD 7:  Seg 24   270-308      5.99  361.98  0.00082       12.5%     54.17
  WD 8:  Seg 28   311-349      7.02  404.45  0.00022       32.5%     55.75
  WD 9:  Seg 43   460-501      3.16  245.22  0.03044       15.0%     46.00
  WD10:  Seg 47   503-542      5.89  358.12  0.00093       20.0%     57.27

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MR----AV---LTW--RDKAEQCIYDLAFKPDGTQLILAAGNR-LLVYD
   WD 2   43-81     -G----TL---LQP--LKGHKDTVYCVAYAKDGKRFASGSADKSIIIWT
   WD 3   82-120    SK----LE---GIL--KYTHNDSIQCVSYNPVTHQLASCS-SSDFGLWS
   WD 4  121-160    PE----QK---SVS--KHKSSSKITCCSWTNDGQYLALGMANGIISIRN
   WD 5  161-204    KNGEEKVK---IER--PGGSLSPIWSICWNPSSRWETIWMSRENEDAED
   WD 6  225-267    SQ----GSEAEEEE--QEEEDDSPRDGNSEEHNDILAVADWGQKLSFYQ
   WD 7  270-308    -G----KQ---IGK--DRPLNFDPCCISYFTKGEYILVGGSDKQVSLFT
   WD 8  311-349    -G----VR---LGT--VGEQNSWVWTCRVKPDSNYVVVGCQDGTISFYQ
   WD 9  460-501    SG----VK---EREWQMESLIRYIKVIGGPAGREGLLVGLKNGQILKIF
   WD10  503-542    DN----LF---AIV--LLKQATAVRCLDMSASRNKLAVVDENDTCLVYD

   WD40 Template    TG----EC---LRT--LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD