Input parameters:

  Query = ENSMUSP00000108544 (Len=906)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108544, Len=906):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSIDGLRQKQVDKLSSSFGNLDPFGTGQPL 80  
WD40-rpts            (__________________WD 1_________________)                                 

Query       81 PPLQIPQQSAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFESVAVPLQQGAEQQRRQPVFISQVVTEKDFLNRSAQLQ 160 
WD40-rpts                                                                                      

Query      161 HAVQSQGFIGYCQKKIEASQTEFEKNVWSFLKVNFEEDSRGKYLELLGYRKEDLGQKRIKEEKQECDFLPSAGGTFNISV 240 
WD40-rpts                                                                                      

Query      241 SGDIDGLITRALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLAQTQKKYFAKSQSKITRLITAVVMKNWREIVESCD 320 
WD40-rpts                                                                                      

Query      321 LKNWREALAAVLTYAKPDEFSALCDLLGTRLEREGDSLLRTQACLCYICAGNVERLVACWTKAQDGSSPLSLQDLIEKVV 400 
WD40-rpts                                                                                      

Query      401 ILRKAVQLTQALDTNTVGALLAEKMSQYASLLAAQGSIAAALAFLPDNTNQPNIVQLRDRLCKAQGKPVSGQESSQSPYE 480 
WD40-rpts                                                                                      

Query      481 RQPLSKGRPGPVAGHSQMPRVQTQQYYPHGENPPPPGFIMQGNVIPNPAAPLPTAPGHMPSQLPPYPQPQPYQPAQQYSF 560 
WD40-rpts                                                                                      

Query      561 GTGGAAAYRPQQPVAPPASNAYPNTPYISPVASYSGQPQMYTAQQASSPTSSSAASFPPPSSGASFQHGGPGAPPSSSAY 640 
WD40-rpts                                                                                      

Query      641 ALPPGTTGTPPAASELPASQRTENQSFQDQASILEGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPSGDPQSQ 720 
WD40-rpts                                                                                      

Query      721 GLQQQPSTPGPLSSHASFPQQHLAGGQPFHGVQQPLAQTGMPPSFSKPNTEGAPGAPIGNTIQHVQALPTEKITKKPIPE 800 
WD40-rpts                                                                                      

Query      801 EHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTLSPTIINGLHSIARSIETRNYSEGLSVHTHIVS 880 
WD40-rpts                                                                                      

Query      881 TSNFSETSAFMPVLKVVLSQASKLGV 906 
WD40-rpts                                

1 WD40-repeats found in QUERY=ENSMUSP00000108544 (Len=906):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-47       3.50  259.33  0.01975       32.5%     41.66

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-47     TGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD