Input parameters:

  Query = ENSMUSP00000108374 (Len=1498)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108374, Len=1498):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGKECDGGDKEGGLAAIQVPVGWQRRVDHNGVLYISPSGSLLSCLDQVKTYLLTDGTCKCGLECPLILPKVFNFDPGA 80  
WD40-rpts                                                                                      

Query       81 AVKQRTAEDVKADDDVTKLCIHKRKIIAVATLHQSMEAPHPSLVLTSPGGGTNATPVVPSRAATPRSVRNKSHEGITNSV 160 
WD40-rpts                                                                                      

Query      161 MPECKNPFKLMTGSSNAMGRLYMQDLPGSQQQELHPVYPRQRLGSSEHGQKSPFRGSHGGLPSPASSGSQIYGDGSISPR 240 
WD40-rpts                                                                                      

Query      241 TDPLGSPDVFTRNNPGFHGAPNSSPIHLNRTPLSPPSVMLHGSPVQSSCAMAGRTNIPLSPTLTTKSPVMKKPMCNFSTN 320 
WD40-rpts                                                                                      

Query      321 MEIPRAMFHHKPPQGPPPPPPPSCALQKKPLTSEKDPLGILDPIPSKPVNQNPIIINPTSFHSNVHSQVPVMNVSMPPAV 400 
WD40-rpts                                                                                      

Query      401 VPLPSNLPLPTVKPGHMNHGSHVQRIQHSASTSLSPSPVTSPVHMMGTGIGRIEASPQRSRSSSTSSDHGNFMMPPVGPQ 480 
WD40-rpts                                                                                      

Query      481 ATCSGIKVPPRSPRSTIGSPRPSMPSSPSTKSDGHHQYKDIPNPLIAGMSNVLNTPSSAAFPTAPAGNGSVKSQPGLLGM 560 
WD40-rpts                                                                                      

Query      561 PLNQILNQHNAASFPASSLLSAAAKAQLANQNKLAGNNSSSSNNSGAVASSGNTEGHSTLNTMFPPTANMLLPTGEGQSG 640 
WD40-rpts                                                                                      

Query      641 RAALRDKLMSQQKDSLRKRKQPPTTVLSLLRQSQMDSSAAPKPGPDLLRKHGQGSFPISSMSQLLQSMSCQSSHLSSNST 720 
WD40-rpts                                                                                      

Query      721 PGCGGSNTALPCSANQLHFPDPNMNSTVLQNSLTQSIPLRGEAVHCHNANTNFVHSNSPVPNHHLAGLINQIQASGNCGM 800 
WD40-rpts                                                                                      

Query      801 LSQSGMALGNSLHPNPPQSRISTSSTPVIPNSIVSSYNQTSSEAGGSSLPSSIAIAGSNHPAITKTTSVLQDGVIVTTAA 880 
WD40-rpts                                                                                      

Query      881 GNPLQSQLPIGSDFPFVGQEHALHFPSNSTANNHLPHPLNPSLLSSLPISLPVNQQHLLNQNLLNILQPSAGEGDISSIN 960 
WD40-rpts                                                                                      

Query      961 NSLNNHQLTHLQSLLNSNQMFPPNQQPQQHLLQGHQNLQAFQGQPTVPCPANNNPMACLFQNFQVRMQGDAALLNKRIST 1040
WD40-rpts                                                                                      

Query     1041 QPGLTTLPENPNLALPHFQDTPCELQPRIDLGQPMKDGLVMGGQGDASVDAIYKAVVDAASKGMQVVITTAVNSTTQISP 1120
WD40-rpts                                                                  (___________________

Query     1121 IPALSAMSAFTASIGDPLNLSSAVSAVIHGRNMGGVDHDGRLRNARGARLPKNIDHGKNSSEGDGFECFKSASCHTSRKQ 1200
WD40-rpts      __________WD 1_____________________________)                                    

Query     1201 WDGEQSPRGERNRWKYEEFLDHPGHIHSSPCHERPNNVSTLPFLAGEQHPILLPPRNCQGDKILEENFRYNNYKRTMMSF 1280
WD40-rpts                                                                                      

Query     1281 KERLESTVERCTHINGNRPRQSRGFGELLGTAKQDLVLEGQSPGSSNSLESSLVKDYIHYNGDFNAKTINGCVPSPSDAK 1360
WD40-rpts                                                                                      

Query     1361 SISSEDDLRNPDSPSSHELIHYRPRTFNVGDLVWGQIKGLTSWPGKFIREDDVHNSCQQSPEEGKVEPEKLKTLTEGLEA 1440
WD40-rpts                                                                                      

Query     1441 YSRVRKRSRKSGKLNNHLEAAIHEAMSELDKMSGTVHQIPQGDRQMRPPKPKRRKISR 1498
WD40-rpts                                                                

1 WD40-repeats found in QUERY=ENSMUSP00000108374 (Len=1498):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6  1101-1164     2.87  233.30  0.04378       20.0%      8.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1101-1164   SKGMQVVITTAVNSTTQISPIPALSAMSAFTASIGDPLNLSSAVSAVIHGRNMGGVDHDGRLRN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-------------DGKRLVS-----------GSEDGTIKVWD