Input parameters:

  Query = ENSMUSP00000108180 (Len=304)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108180, Len=304):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRLIHTLADHGDDVSCCAFSAALLATCSLDKTIRLYSLSDFAELPYSPLKFHTYAVHCCCFSPSGHVLASCSTDGTTVL 80  
WD40-rpts      (________________WD 1________________)(___________________WD 2__________________

Query       81 WSSHSGHTLTVLEQPGGSPVRVCCFSPDSAYLASGAADGSIALWNAQTYKLYRCGSVKDSSLVACAFSPDGGLFVTGSSG 160 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      161 GDLTVWDDRMRCLHSEKAHDLGITCCSFSSQPLSGGEGLQSYQLASCGQDCEIKLWAVTITRVLGFELKYKSTLSGHCAP 240 
WD40-rpts      ______)  (_____________________WD 5_____________________)          (____________

Query      241 VLACAFSHDGKMLASGFCNSKIGFTVFVSFLSCPCGQIQIFGCTHVVHTHRHRHVHIISTQVNK 304 
WD40-rpts      _____WD 6________________)   (_______________WD 7______________)

7 WD40-repeats found in QUERY=ENSMUSP00000108180 (Len=304):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.28  456.55  4.4e-05       27.5%     51.18
  WD 2:  Seg  5    39-82       9.13  491.64  1.5e-05       37.5%     46.04
  WD 3:  Seg  8    86-125      8.54  467.26  3.1e-05       40.0%     55.34
  WD 4:  Seg 12   129-167      9.92  524.34  5.3e-06       37.5%     54.51
  WD 5:  Seg 16   170-217      7.84  438.66  7.6e-05       35.0%     55.65
  WD 6:  Seg 20   228-266      9.07  489.24  1.6e-05       37.5%     46.88
  WD 7:  Seg 22   270-304      2.88  233.61  0.04337       10.0%     31.97

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MVR----LIHTLADH-GDDVSCCAFS-----------AALLATCSLDKTIRLYS
   WD 2   39-82     LSDFAELPYSPLKFH-TYAVHCCCFSP---------SGHVLASCSTDGTTVLWS
   WD 3   86-125    -GH----TLTVLEQPGGSPVRVCCFSP---------DSAYLASGAADGSIALWN
   WD 4  129-167    -YK----LYRCGSVK-DSSLVACAFSP---------DGGLFVTGSSGGDLTVWD
   WD 5  170-217    -MR----CLHSEKAH-DLGITCCSFSSQPLSGGEGLQSYQLASCGQDCEIKLWA
   WD 6  228-266    -LK----YKSTLSGH-CAPVLACAFSH---------DGKMLASGFCNSKIGFTV
   WD 7  270-304    -FL----SCPCGQIQ-IFGCTHVVHTH---------RHRHVHIISTQVN----K

   WD40 Template    TGE----CLRTLSGH-TSGVTSVSFSP---------DGKRLVSGSEDGTIKVWD