Input parameters:

  Query = ENSMUSP00000108162 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000108162, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAALQVLPCLLRAPSRPLLWGPPVARMTSGMALAEQARQLFDSAVGAVQPGPMLQRTLSLDPSGRQLKVRDRTFQLREN 80  
WD40-rpts                                                                                      

Query       81 LYLVGFGKAVLGMAAAAEELLAQHLVQGVISVPKGIRAAMEHAGKKEMLLKPHSRIQVFEGAEDNLPDRDALRAALTIQQ 160 
WD40-rpts                                                                                      

Query      161 LAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQMLTKLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVISLI 240 
WD40-rpts                                                                                      

Query      241 LSDVIGDPLEVIASGPTVASTHSVQDCLHILNHYGLRAALPRSVKTVLSRADSDPHGPHTCGHVLNVIIGSNSLALAEAQ 320 
WD40-rpts                                                                                      

Query      321 RQAEVLGYHAMVLSTAMQGDVKRVARFYGLLARVAAAHLTPSLAERPLEEEAELHQLAAELQLPDLQLEEALEAVVKAKG 400 
WD40-rpts                                                                                      

Query      401 PVCLLAGGEPTVQLQGSGKGGRNQELALHVGVELGRQPLGPIDVLFLSGGTDGQDGPTKVAGAWVMSDLISQASAESLDI 480 
WD40-rpts            (________________________WD 1_______________________)                     

Query      481 ATSLANNDSYTFFCRFRGGTHLLHTGLTGTNVMDVHLLILHPQ 523 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=ENSMUSP00000108162 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   407-459      3.69  266.89  0.01565       25.0%      6.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  407-459    GGEPTVQLQGSGKGGRNQELALHVGVELGRQPLGPIDVLFLSGGTDGQDGPTK

   WD40 Template    TGECLRTLSGHTSGVT-------------SVSFSPDGKRLVSGSEDGTIKVWD