Input parameters:

  Query = ENSMUSP00000107982 (Len=919)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107982, Len=919):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSMPSKGQPSLREAISM 80  
WD40-rpts                                                                                      

Query       81 SCITNGSGISRKQNHTSSVSIARKETLSSAAKSIKRPPTAEKSHNSWENSDDSRNKLMKTVSTSKLISKVIKNADKHKDV 160 
WD40-rpts                                 (___________________WD 1___________________) (_______

Query      161 IVNQEGEYIKMFMRGRPITMFIPSDVDNYDDIRTELPPEKLKLEWVYGYRGKDCRANVYLLPTGEIVYFIASVVVLFNYE 240 
WD40-rpts      ___________WD 2__________________)                                            (_

Query      241 ERTQRHYLGHTDCVRCLAVHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGV 320 
WD40-rpts      ______________________WD 3______________________)(_____________________WD 4_____

Query      321 HLCVIDDSNEHMLTVWDWQKKSKIAEIKTTNEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKPKF 400 
WD40-rpts      ________________)   (_________________WD 5________________)(____________________

Query      401 VQCLAFLGNGDVLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNGMLLTGGGKDRKIILWDH 480 
WD40-rpts      WD 6____________________)               (_________________WD 7________________)(

Query      481 DLNLEREIEVPDQYGTIRAVAEGRAEQFLVGTSRNFILRGTFNDGFQIEVQGHTDELWGLATHPFKDLLLTCAQDRQVCM 560 
WD40-rpts      ___________________WD 8__________________)(_________________WD 9________________

Query      561 WNSVEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRDLVSIHTDGNEQLSVMRYSVDGTLLAVGSHDNF 640 
WD40-rpts      _)(__________________WD10_________________)   (_________________WD11____________

Query      641 IYLYTVLENGRKYSRYGKCTGHSSYITHLDWSPDNKHIMSNSGDYEILYWDIENGCKLIRNRSDCKDIDWTTYTCVLGFQ 720 
WD40-rpts      ____)       (_________________WD12________________)                         (___

Query      721 VFGVWPEGSDGTDINALVRSHNRRVIAVADDFCKVHLFQYPCSKAKAPSHKYSAHSSHVTNVSFTHNDSHLISTGGKDMS 800 
WD40-rpts      ________________WD13__________________)      (_________________WD14_____________

Query      801 IIQWKLVEKLPVPQNEVITDASVTKTPASSSETARPSNSPPLPPSLPLTGTAEEESRMGSSPTLVENSLEQIAEPSEEQS 880 
WD40-rpts      ____)                                                                           

Query      881 EWGSEDLGVVIDEEPASELSETQGATELPEEERGITPLC 919 
WD40-rpts                                             

14 WD40-repeats found in QUERY=ENSMUSP00000107982 (Len=919):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   108-151      4.57  303.48  0.00505       10.0%     21.42
  WD 2:  Seg  4   153-194      4.89  316.53  0.00337        2.5%     24.37
  WD 3:  Seg 11   239-289      6.77  394.11  0.00030       35.0%     55.09
  WD 4:  Seg 15   290-337      5.90  358.33  0.00092       22.5%     42.40
  WD 5:  Seg 19   341-379      7.35  418.20  0.00014       15.0%     56.54
  WD 6:  Seg 23   380-425      5.30  333.69  0.00198       17.5%     46.96
  WD 7:  Seg 27   441-479      7.53  425.90  0.00011       25.0%     51.87
  WD 8:  Seg 31   480-522      5.38  336.70  0.00180       12.5%     53.58
  WD 9:  Seg 35   523-562      8.93  483.48  1.9e-05       17.5%     56.35
  WD10:  Seg 39   563-603      6.65  389.26  0.00035       22.5%     58.19
  WD11:  Seg 43   607-645      7.85  438.74  7.6e-05       20.0%     57.51
  WD12:  Seg 47   653-691      8.56  468.15  3.0e-05       35.0%     53.22
  WD13:  Seg 53   717-759      5.81  354.55  0.00104        5.0%     55.25
  WD14:  Seg 57   766-805      6.67  390.27  0.00034       32.5%     48.02

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-151    SS-------A-AKSIKRP--PT---AEKSHNSWENSDDS-RNKLM----KTVSTSKL----------ISKVI
   WD 2  153-194    NA-------D-K----HKDVIV---NQEGEYIKMFMRGR-PITMF----IPSDVDNY----------DDIRT
   WD 3  239-289    YE-------ERT----QR--HY---LGHTDCVRCLAVHP-DKIRI----ATGQIAGVDKDGRPLQPHVRVWD
   WD 4  290-337    SV-------S-LTTLHVI--GL---GTFERGVGCLDFSK-ADSGVHLCVIDDSNEHM----------LTVWD
   WD 5  341-379    -K-------S-K----IA--EI---KTTNEVVLAVEFHP-TDANT----IITCGKSH----------IFFWT
   WD 6  380-425    WSGNSLTRKQ-G----IF--GK---YEKPKFVQCLAFLG-NGDVL----TGDS-GGV----------MLIWS
   WD 7  441-479    -Y-------Q-I----NR--QI---KAHDGSVFTLCQMR-NGMLL----TGGGKDRK----------IILWD
   WD 8  480-522    HD----LNLE-R----EI--EV---PDQYGTIRAVAEGR-AEQFL----VGTSRNFI----------LRGTF
   WD 9  523-562    ND-------G-F----QI--EV---QGHTDELWGLATHP-FKDLL----LTCAQDRQ----------VCMWN
   WD10  563-603    SV-------EHR----LE--WT---RLVDEPGHCADFHP-SGTVV----AIGTHSGR----------WFVLD
   WD11  607-645    -R-------D-L----VS--IH---TDGNEQLSVMRYSV-DGTLL----AVGSHDNF----------IYLYT
   WD12  653-691    -Y-------S-R----YG--KC---TGHSSYITHLDWSP-DNKHI----MSNSGDYE----------ILYWD
   WD13  717-759    LG-------F-Q----VF--GVWPEGSDGTDINALVRSH-NRRVI----AVADDFCK----------VHLFQ
   WD14  766-805    -K-------A-P----SH--KY---SAHSSHVTNVSFTHNDSHLI----STGGKDMS----------IIQWK

   WD40 Template    TG-------E-C----LR--TL---SGHTSGVTSVSFSP-DGKRL----VSGSEDGT----------IKVWD