Input parameters:

  Query = ENSMUSP00000107946 (Len=416)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107946, Len=416):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVV 80  
WD40-rpts                                                                                      

Query       81 ARVHIPNDDAQFDASHCDSDKGGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD 160 
WD40-rpts                                    (______________WD 1_____________)             (___

Query      161 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 240 
WD40-rpts      ______________WD 2_________________)(______________________WD 3_________________

Query      241 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 320 
WD40-rpts      _____)      (_________________WD 4_________________)(___________________WD 5____

Query      321 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYN 400 
WD40-rpts      _______________)(__________________________WD 6_________________________)       

Query      401 DEESDVTASELEGQGS 416 
WD40-rpts                      

6 WD40-repeats found in QUERY=ENSMUSP00000107946 (Len=416):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   111-143      3.47  258.04  0.02055       12.5%     43.14
  WD 2:  Seg  8   157-196      5.72  350.89  0.00116       27.5%     51.58
  WD 3:  Seg 12   197-246      5.71  350.62  0.00117       22.5%     50.42
  WD 4:  Seg 16   253-292      7.24  413.60  0.00017       32.5%     53.08
  WD 5:  Seg 20   293-336      6.87  398.35  0.00027       30.0%     51.66
  WD 6:  Seg 24   337-393      5.63  347.38  0.00130       30.0%     56.11

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  111-143    ---------------------------INHEGEVNRARYMPQNP-HII-ATKTPSSDVLVFD
   WD 2  157-196    -C----------------NP---DLRLRGHQKEGYGLSWNSNLSGH-L-LSASDDHTVCLWD
   WD 3  197-246    IN-------AGPKEGKIVDA---KAIFTGHSAVVEDVAWHLLHE-S-LFGSVADDQKLMIWD
   WD 4  253-292    -S----------------KP---SHLVDAHTAEVNCLSFNPYSEFI-L-ATGSADKTVALWD
   WD 5  293-336    LR----------------NLKLKLHTFESHKDEIFQVHWSPHNE-TIL-ASSGTDRRLNVWD
   WD 6  337-393    LSKIGEEQSAEDAEDGPPEL---LFIHGGHTAKISDFSWNPNEPWV-I-CSVSEDNIMQIWQ

   WD40 Template    TG----------------EC---LRTLSGHTSGVTSVSFSPDGK-R-L-VSGSEDGTIKVWD