Input parameters:

  Query = ENSMUSP00000107940 (Len=235)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107940, Len=235):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 RGRRPSGVAARVRVGRGGRSWIPPDYGCRSWLVFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVT 80  
WD40-rpts                                                                                      

Query       81 KPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMP 160 
WD40-rpts                                                                                      

Query      161 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA 235 
WD40-rpts                         (________________________WD 1_______________________)   

1 WD40-repeats found in QUERY=ENSMUSP00000107940 (Len=235):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   180-232      4.17  286.82  0.00846       27.5%     46.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  180-232    YTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD

   WD40 Template    TGECLR------------TLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD