Input parameters:

  Query = ENSMUSP00000107917 (Len=1020)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107917, Len=1020):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALVTLQRSPTPSAASSSASNSELEAGSDEERKLNLSLSESFFMVKGAALFLQQGNSPQGQRSLQHPHKHAGDLPQHLQV 80  
WD40-rpts                                                                                      

Query       81 MINLLRCEDRIKLAVRLESVWTDRVRYMVVVYTSGRQDTEENILLGVDFSSKESKSCTIGMVLRLWSDTKIHLDGDGSAL 160 
WD40-rpts                                                                       (______________

Query      161 QVLHKACEVARRHNYFPGGVALIWATYYESCISSEQSCINEWNAMQDLESTRPDSPALFVDKPTEGERTERLIKAKLRSI 240 
WD40-rpts      _____________________WD 1___________________________________)                   

Query      241 MMSQDLENVTSKEIRNELEKQMNCNLKEFKEFIDNEMLLILGQMDKPSLIFDHLYLGSEWNASNLEELQGSGVDYILNVT 320 
WD40-rpts                                                                                      

Query      321 REIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAYNY 400 
WD40-rpts                                                                                      

Query      401 VKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLPRSLA 480 
WD40-rpts                                                                                      

Query      481 PGGPALPCCFRRLSDPLLLPHHDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQHPQEGARLCEKDVKRKLEFGNSKPR 560 
WD40-rpts                                                                                      

Query      561 SDSLPQVEELEKDGSPRTGRWRRASTQLDRSLLDQENLNNNNSKRSCPDDLERDAMFGILSKVKPPYTSCADCMYPTAGG 640 
WD40-rpts                                                                                      

Query      641 TPEAYMERHEDPSSSAICTQPTFLPHVTSSPMAHASSRSRAPERPASGPANTSPFLLPAGSRKPDVSGSGAGAAPEPPAS 720 
WD40-rpts                                                                                      

Query      721 LLEPSRETSKALPKSLQLKNPHCDKNAANMEVSAKEEPSPKKDPKPAKDLRLLFSNEAEKPTTNSYLMQHQESIIQLQKA 800 
WD40-rpts                                                                                      

Query      801 GLVRKHTKELERLKSLPSDSPAACRDSATCRLEASIPEEGSQEPAHPALCSQAGSEEQPVGGTLQKSPTSTLPRLDHTSN 880 
WD40-rpts                                                                                      

Query      881 FSKDFLKTVCYTPTSSSISSNLTRSSSSDSIHSVRGKPGLVKQRAQEIETRLRLAGLTVSSPLKRSHSLAKLGSLNFSTE 960 
WD40-rpts                                                                                      

Query      961 DLSSEADTSTIADSQDAKCGLSSSFLPEPQSAPRDPAATSKSSGKSAPEHLKSPSRVNKS 1020
WD40-rpts                                                                  

1 WD40-repeats found in QUERY=ENSMUSP00000107917 (Len=1020):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   146-221      2.79  229.83  0.04863       22.5%      0.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  146-221    WSDTKIHLDGDGSALQVLHKACEVARRHNYFPGGVALIWATYYESCISSEQSCINEWNAMQDLESTRPDSPALFVD

   WD40 Template    TGECLRTLSGHTS-----------------GVTSVS----------FSPD---------GKRLVSGSEDGTIKVWD