Input parameters:

  Query = ENSMUSP00000107772 (Len=638)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107772, Len=638):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALLQSMGLTTDSPIVFSEY 80  
WD40-rpts                                                                                      

Query       81 WVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSVLQLHSDSDLGRGPIKLGMAKITQVDFPPREIVTYTKET 160 
WD40-rpts                                                                                      

Query      161 QTPVTAQPKEDEEEEDDVATPKPPVEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQ 240 
WD40-rpts                                                                                      

Query      241 INIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKY 320 
WD40-rpts                                                                                   (__

Query      321 KKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLIS 400 
WD40-rpts      _________________WD 1___________________)           (_________________WD 2______

Query      401 ISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPIT 480 
WD40-rpts      __________)(______________________WD 3_____________________)     (______________

Query      481 GIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEV 560 
WD40-rpts      ______WD 4___________________)   (_________________WD 5_________________)(______

Query      561 PTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA 638 
WD40-rpts      ______________WD 6___________________)                                        

6 WD40-repeats found in QUERY=ENSMUSP00000107772 (Len=638):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   318-361      3.51  259.62  0.01958       27.5%     42.61
  WD 2:  Seg 11   373-411      5.06  323.67  0.00270       30.0%     45.57
  WD 3:  Seg 14   412-460      2.89  234.02  0.04283       30.0%     47.20
  WD 4:  Seg 18   466-510      5.07  324.09  0.00267       22.5%     42.89
  WD 5:  Seg 21   514-553      4.65  306.89  0.00455       20.0%     53.23
  WD 6:  Seg 25   554-598      4.36  294.96  0.00658       15.0%     55.41

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  318-361    MKY-----K--------KTTPEYVFHCQSAVMSATF--AKFH------PNLV-VGGTYSGQIVLWD
   WD 2  373-411    TP----------------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ISISTDGKICSWS
   WD 3  412-460    LDM-----LSHPQDSMELVH---KQSKAVAVTSMSF--PVGD------VNNF-VVGSEEGSVYTAC
   WD 4  466-510    -AG-----I--------SEM---FEGHQGPITGIHC--HA-AVGAVDFSHLF-VTSSFDWTVKLWT
   WD 5  514-553    -NK-----P--------LYS---FEDNSDYVYDVMW--SP-T------HPALFACVDGMGRLDLWN
   WD 6  554-598    LNNDTEVPT--------ASI---SVEGNPALNRVRW--TH-S------GREI-AVGDSEGQIVIYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD