Input parameters:

  Query = ENSMUSP00000107766 (Len=612)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107766, Len=612):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALLQSMGLTTDSPIVPPPM 80  
WD40-rpts                                                                                      

Query       81 SPSSKSVSTPSEAGSQDSGDGAVGSRRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVATPKPPVE 160 
WD40-rpts                                                                                      

Query      161 PEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLS 240 
WD40-rpts                                                                                      

Query      241 LNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPN 320 
WD40-rpts                                                         (___________________WD 1_____

Query      321 LVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH 400 
WD40-rpts      ______________)           (_________________WD 2________________)(______________

Query      401 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTV 480 
WD40-rpts      ________WD 3_____________________)     (____________________WD 4________________

Query      481 KLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIA 560 
WD40-rpts      ___)   (_________________WD 5_________________)(____________________WD 6________

Query      561 VGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA 612 
WD40-rpts      ___________)                                        

6 WD40-repeats found in QUERY=ENSMUSP00000107766 (Len=612):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   292-335      3.59  262.99  0.01765       17.5%     41.41
  WD 2:  Seg 12   347-385      5.09  324.94  0.00260       30.0%     45.67
  WD 3:  Seg 15   386-434      2.78  229.50  0.04912       30.0%     48.57
  WD 4:  Seg 19   440-484      4.98  320.44  0.00299       22.5%     43.30
  WD 5:  Seg 22   488-527      4.56  303.04  0.00512       20.0%     53.50
  WD 6:  Seg 26   528-572      4.36  294.80  0.00661       15.0%     55.27

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  292-335    MKY-----K--------KTTPEYVFHCQSAVMSATFA--KF-H------PNLV-VGGTYSGQIVLWD
   WD 2  347-385    TP----------------LS----AAAHTHPVYCVNVVGTQ-N------AHNL-ISISTDGKICSWS
   WD 3  386-434    LDM-----LSHPQDSMELVH----KQSKAVAVTSMSF--PVGD------VNNF-VVGSEEGSVYTAC
   WD 4  440-484    -AG-----I--------SEM----FEGHQGPITGIHC--HA-AVGAVDFSHLF-VTSSFDWTVKLWT
   WD 5  488-527    -NK-----P--------LYS----FEDNSDYVYDVMW--SP-T------HPALFACVDGMGRLDLWN
   WD 6  528-572    LNNDTEVPT--------ASI----SVEGNPALNRVRW--TH-S------GREI-AVGDSEGQIVIYD

   WD40 Template    TGE-----C--------LRT----LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD