Input parameters:

  Query = ENSMUSP00000107672 (Len=413)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107672, Len=413):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFNKTWQEHAK 80  
WD40-rpts                                                                                      

Query       81 TRAKPEDFTYKEFPMEFEFRAHPWYISRHGLTRNGQGKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQ 160 
WD40-rpts                           (_____________WD 1_____________)   (_________________WD 2__

Query      161 IAVTIDMQSTIKLWDCHNKEVLASKTGLFFSCKLLQSEFTKDGPIVLVFYMSSLLRPSEFSAPVSTVLEVPLIRKVFWTP 240 
WD40-rpts      ______________)   (__________________WD 3_________________)(__________________WD

Query      241 RREDRITLMSLILPENITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGTPDHFGVSDKDVIVCSTRFSLLLFDINGL 320 
WD40-rpts       4__________________)       (_________________WD 5________________)          (__

Query      321 RLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPK 400 
WD40-rpts      _______________WD 6_________________)                                           

Query      401 PCCLMAYTLNVCS 413 
WD40-rpts                   

6 WD40-repeats found in QUERY=ENSMUSP00000107672 (Len=413):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   102-133      4.49  299.99  0.00563       15.0%     34.51
  WD 2:  Seg  8   137-175      8.42  462.54  3.6e-05       22.5%     51.22
  WD 3:  Seg 12   179-219      5.72  350.82  0.00116       15.0%     40.30
  WD 4:  Seg 16   220-261      3.20  246.69  0.02910       17.5%     39.70
  WD 5:  Seg 21   269-307      5.81  354.78  0.00103       17.5%     39.60
  WD 6:  Seg 26   318-357      8.47  464.56  3.4e-05       15.0%     37.02

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  102-133    --------HPWYISRHGLT--RNG---Q-GKSAVCMTSMNRISTWD
   WD 2  137-175    -GAMTWESPKQPSYIVWMT--TLP---E-MQIAVTIDMQSTIKLWD
   WD 3  179-219    -KEVLASKTGLFFSCKLLQSEFTK---D-GPIVLVFYMSSLLRPSE
   WD 4  220-261    -FSAPVSTVLEVPLIRKVF--WTPRRED-RITLMSLILPENITKFD
   WD 5  269-307    --GIGNKVTIQGYLTASFS--LAE---DEGTPDHFGVSDKDVIVCS
   WD 6  318-357    NGLRLQTFHYCPEEIWRLW--VDP---V-HVIVTCDAGSLDIYAWE

   WD40 Template    TGECLRTLSGHTSGVTSVS--FSP---D-GKRLVSGSEDGTIKVWD