Input parameters:

  Query = ENSMUSP00000107670 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107670, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAK 80  
WD40-rpts                                                                                      

Query       81 TRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQ 160 
WD40-rpts                    (_________________WD 1________________)   (_________________WD 2__

Query      161 IAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELY 240 
WD40-rpts      ______________)   (__________________WD 3_________________)   (_________________

Query      241 FSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKL 320 
WD40-rpts      WD 4________________)  (_________________WD 5_________________)                 

Query      321 EGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCD 400 
WD40-rpts                (_________________WD 6________________)  (_________________WD 7_______

Query      401 AGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS 466 
WD40-rpts      _________)                                                        

7 WD40-repeats found in QUERY=ENSMUSP00000107670 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    95-133      4.18  287.34  0.00833       15.0%     43.41
  WD 2:  Seg  6   137-175      8.39  461.41  3.8e-05       22.5%     49.26
  WD 3:  Seg 10   179-219      6.92  400.58  0.00025       22.5%     50.11
  WD 4:  Seg 14   223-261      7.13  409.28  0.00019       10.0%     55.63
  WD 5:  Seg 18   264-303      8.66  472.28  2.7e-05       12.5%     43.93
  WD 6:  Seg 24   331-369      5.66  348.43  0.00125       15.0%     32.93
  WD 7:  Seg 28   372-410      6.93  400.80  0.00025       15.0%     39.55

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   95-133    -VEFEFRAHPWYISRHGLT--RNGQEKSAVCMTSMNRISTWD
   WD 2  137-175    -GAMTWESPKQPSYIVWMT--TLPEMQIAVTIDMQSTIKLWD
   WD 3  179-219    -KEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFR
   WD 4  223-261    -LHLISKVNVFPYSIDELY--FSPQKKWVFLIGHRLNDLTKV
   WD 5  264-303    MSSLLRPSEFSAPVSTVLK--VPVIRKVFWTPRREDRITLMS
   WD 6  331-369    -GYLTASFSLAEDEGRPDY--FGVSDKDVIVCSTRFSLLLFD
   WD 7  372-410    -GLRLQTFHYCPEEIWRLW--VDPVHVIVTCDAGSLDIYAWE

   WD40 Template    TGECLRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD