Input parameters:

  Query = ENSMUSP00000107616 (Len=1001)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107616, Len=1001):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTPGPKSQNPPEDIKALSWNLQVQHILASAHPSGKAVVWDLRKNEPIIKVSSHSSRMNCSGLAWNPDIATQLVLCSEDDQ 80  
WD40-rpts      (_________________WD 1_________________)                                        

Query       81 LPVIQLWDLRFASSPLKVLESHSRGILSMSWNQADAELLLSTAKDSQIFCWNLSSSEVVYKLPTQSSWCFDVQWCPQSPP 160 
WD40-rpts                  (_________________WD 2_________________)   (_________________WD 3___

Query      161 VFSAVSFDGWISLCSVMGRSWEAQHMRQADKVPEQVAQASLIPPLKKPPKWMRRPAGGSFAFGGKLVTFGLPSIPVQPVA 240 
WD40-rpts      ______________)                                                                 

Query      241 QACSRPVFISQVITESEVLTRSVVLQEALGSGNLLNYCQSKVQQASLPCEKILWQFLKVTLEQDSRPKFLGLLGYSREEL 320 
WD40-rpts                                                                                      

Query      321 QKKVDTCLKSDSKSQESPQLEAVDLKSDRAHSPCAQASKHTAKEASESSAFFDELIPQNMTPWEIPTTEDTDGLLSQALL 400 
WD40-rpts                                                                                      

Query      401 LGELRSAVELCLKEERFADAIILAQAGDAELLKWTQERYLAKRRTKTSSLLACVVKKNWKDLVCACRLKNWREALALLLT 480 
WD40-rpts                                                                                      

Query      481 YSGPEKFPELCDMLGTRMEQEGGRALTSEARLCYVCSGSVERLVESWAKFQQASSPMALQELMEQVTVLSRSLELLQGSN 560 
WD40-rpts                                                                                      

Query      561 KMSPGPATTHRLTQYANLLAAQGSLATAMSFLPSDCIQPGVQQLRDRLFHAQGSAVLGQQAPAFPFPRVAVGAALHSKET 640 
WD40-rpts                                                                                      

Query      641 SSYRRGLQPPQQVPAPSVRPRTTAQPSSVMPFSPSQPSPSQGSSDHRVLRPQAILPGHFVPGVRPALSPPQLSGGQSVPA 720 
WD40-rpts                                                                                      

Query      721 VNPAGFCGAWPLPGPTPVMASPDFMQPGSTHLPETPRLLPLPPVGPPGPNPLSSQLPASPVTFSVAPPPGGPRAPCSSAL 800 
WD40-rpts                                                                                      

Query      801 PSSGILATCPGPQDSWKVSPASQGNLQRKKLPETFMPPAPITAPLRSLGPEPQQALLPQPLVSSATLPPPGAPRECSLQQ 880 
WD40-rpts                                                                                      

Query      881 LQPLPPERTEKELPPEHQCVKDSFEALLQRCSLTATDLKTKRKLEEAARRLECLYEKLCEGTLSPHVLAGLHEVARCVDA 960 
WD40-rpts                                                                                      

Query      961 GSFEQGLAVHAQVAGCSSFSEVSSFMPMLKAVLTIAHKLQG 1001
WD40-rpts                                               

3 WD40-repeats found in QUERY=ENSMUSP00000107616 (Len=1001):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       3.19  246.29  0.02947       17.5%     37.68
  WD 2:  Seg  8    93-132      5.96  360.95  0.00085       30.0%     38.23
  WD 3:  Seg 11   136-175      3.53  260.39  0.01912       22.5%     47.72

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MTPGPKS-QNPPEDIKALSWNL-QV-QHILASAHPSGKAVVWD
   WD 2   93-132    -SSPLKVLESHSRGILSMSWNQADA-EL-LLSTAKDSQIFCWN
   WD 3  136-175    -SEVVYKLPTQSSWCFDVQWCP-QSPPV-FSAVSFDGWISLCS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DG-KR-LVSGSEDGTIKVWD