Input parameters:

  Query = ENSMUSP00000107590 (Len=406)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107590, Len=406):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MISPSPEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKSRSSKNDPK 80  
WD40-rpts                       (_________________WD 1________________)  (_________________WD 2

Query       81 GRGSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQAPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRD 160 
WD40-rpts      _________________)  (__________________WD 3_________________)   (_______________

Query      161 LSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGH 240 
WD40-rpts      __WD 4_________________)    (_________________WD 5________________)   (_________

Query      241 QSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEPTMDDSDVHMSSLRSVCFSPEGLYLATVADDRLLR 320 
WD40-rpts      ________WD 6________________)          (___________________WD 7_________________

Query      321 IWALELKAPVAFAPMTNGLCCTFFPHGGIIATGTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEF 400 
WD40-rpts      __)(_________________WD 8_________________)(_________________WD 9_______________

Query      401 LTYRTF 406 
WD40-rpts      _)    

9 WD40-repeats found in QUERY=ENSMUSP00000107590 (Len=406):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-56       8.31  457.76  4.2e-05       22.5%     52.84
  WD 2:  Seg  6    59-98       6.54  384.83  0.00041       22.5%     50.27
  WD 3:  Seg 10   101-141      6.90  399.84  0.00025       22.5%     43.06
  WD 4:  Seg 13   145-184      9.28  498.05  1.2e-05       47.5%     57.34
  WD 5:  Seg 17   189-227      9.51  507.44  9.0e-06       32.5%     56.14
  WD 6:  Seg 21   231-269     10.14  533.44  4.0e-06       42.5%     55.14
  WD 7:  Seg 26   280-323      8.77  477.03  2.3e-05       27.5%     43.50
  WD 8:  Seg 29   324-363      7.06  406.15  0.00021       17.5%     48.46
  WD 9:  Seg 32   364-402      5.66  348.35  0.00126       10.0%     45.52

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-56     -G----RPHQFDWKSSCETWSVAFSPDGS--W-FAWSQGHCVVKLVP
   WD 2   59-98     -L----EEQFIPKGFEAKSRSSKNDPKGR-GS-LKEKTLDCGQIVWG
   WD 3  101-141    -F----SPWPSPPSRKLWARHHPQAPDVSCLI-LATGLNDGQIKIWE
   WD 4  145-184    -G----LLLLNLSGHQDVVRDLSFTPSGS--LILVSASRDKTLRIWD
   WD 5  189-227    -G----KQIQVLSGHLQWVYCCSISPDCS--M-LCSAAGEKSVFLWS
   WD 6  231-269    -Y----TLIRKLEGHQSSVVSCDFSPDSA--L-LVTASYDTSVIMWD
   WD 7  280-323    HHTQLEPTMDDSDVHMSSLRSVCFSPEGL--Y-LATVADDRLLRIWA
   WD 8  324-363    LE----LKAPVAFAPMTNGLCCTFFPHGG--I-IATGTRDGHVQFWT
   WD 9  364-402    -A----PRVLSSLKHLCRKALRSFLTTYQ--V-LALPIPKKMKEFLT

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGK--R-LVSGSEDGTIKVWD