Input parameters:

  Query = ENSMUSP00000107571 (Len=636)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107571, Len=636):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 EEEAGSGRCVGCGLARKGRPRRRADPVVRAIMDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALT 80  
WD40-rpts                                                                                      

Query       81 AFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKAKLANGTSSMIVPKQRKLSAS 160 
WD40-rpts                                                                                      

Query      161 YEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAE 240 
WD40-rpts                                                                                      

Query      241 LVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCG 320 
WD40-rpts                                                                                (_____

Query      321 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 400 
WD40-rpts      _______________WD 1____________________)   (________________WD 2_______________)

Query      401 VNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 480 
WD40-rpts         (________________WD 3_______________)(___________________WD 4________________

Query      481 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 560 
WD40-rpts      __)   (________________WD 5_______________)   (________________WD 6_____________

Query      561 VWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR 636 
WD40-rpts      __)                (______________WD 7_____________)                        

7 WD40-repeats found in QUERY=ENSMUSP00000107571 (Len=636):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   315-360      6.02  363.47  0.00079       30.0%     48.37
  WD 2:  Seg  7   364-400      8.80  478.20  2.2e-05       40.0%     51.17
  WD 3:  Seg 11   404-440      7.91  441.55  7.0e-05       37.5%     52.59
  WD 4:  Seg 15   441-483      7.69  432.15  9.3e-05       45.0%     43.86
  WD 5:  Seg 18   487-523      8.54  467.25  3.1e-05       40.0%     51.37
  WD 6:  Seg 22   527-563      8.97  485.24  1.8e-05       55.0%     54.46
  WD 7:  Seg 26   580-612      6.78  394.62  0.00030       37.5%     46.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  315-360    SNWRCGRH-----SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD
   WD 2  364-400    -L-----E-----CKRILTGHTGSVLCL-QY--DERVIITGSSDSTVRVWD
   WD 3  404-440    -G-----E-----MLNTLIHHCEAVLHL-RF--NNGMMVTCSKDRSIAVWD
   WD 4  441-483    MA-----SPTDITLRRVLVGHRAAVNVV-DF--DDKYIVSASGDRTIKVWN
   WD 5  487-523    -C-----E-----FVRTLNGHKRGIACL-QY--RDRLVVSGSSDNTIRLWD
   WD 6  527-563    -G-----A-----CLRVLEGHEELVRCI-RF--DNKRIVSGAYDGKIKVWD
   WD 7  580-612    ---------------RTLVEHSGRVFRL-QF--DEFQIVSSSHDDTILIWD

   WD40 Template    TG-----E-----CLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDGTIKVWD