Input parameters:

  Query = ENSMUSP00000107567 (Len=569)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107567, Len=569):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPAEAVLQEKALKFMNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKAKLANGTS 80  
WD40-rpts                                                                                      

Query       81 SMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENI 160 
WD40-rpts                                                                                      

Query      161 LSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKII 240 
WD40-rpts                                                                                      

Query      241 QDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVI 320 
WD40-rpts              (____________________WD 1___________________)   (________________WD 2___

Query      321 ITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 400 
WD40-rpts      ____________)   (________________WD 3_______________)(___________________WD 4___

Query      401 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 480 
WD40-rpts      _______________)   (________________WD 5_______________)   (________________WD 6

Query      481 KRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSP 560 
WD40-rpts      _______________)            (________________WD 7_______________)               

Query      561 SRTYTYISR 569 
WD40-rpts               

7 WD40-repeats found in QUERY=ENSMUSP00000107567 (Len=569):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   249-293      6.64  388.75  0.00036       32.5%     48.90
  WD 2:  Seg  5   297-333      8.78  477.21  2.3e-05       40.0%     51.23
  WD 3:  Seg  9   337-373      8.02  445.97  6.1e-05       37.5%     52.24
  WD 4:  Seg 13   374-416      7.69  432.34  9.3e-05       45.0%     45.02
  WD 5:  Seg 16   420-456      8.56  468.24  3.0e-05       40.0%     51.24
  WD 6:  Seg 20   460-496      9.00  486.32  1.7e-05       55.0%     54.01
  WD 7:  Seg 24   509-545      7.21  412.38  0.00017       42.5%     45.15

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  249-293    NWR-----CGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD
   WD 2  297-333    -LE-----C----KRILTGHTGSVLCL-QY--DERVIITGSSDSTVRVWD
   WD 3  337-373    -GE-----M----LNTLIHHCEAVLHL-RF--NNGMMVTCSKDRSIAVWD
   WD 4  374-416    MASPTDITL----RRVLVGHRAAVNVV-DF--DDKYIVSASGDRTIKVWN
   WD 5  420-456    -CE-----F----VRTLNGHKRGIACL-QY--RDRLVVSGSSDNTIRLWD
   WD 6  460-496    -GA-----C----LRVLEGHEELVRCI-RF--DNKRIVSGAYDGKIKVWD
   WD 7  509-545    -TL-----C----LRTLVEHSGRVFRL-QF--DEFQIVSSSHDDTILIWD

   WD40 Template    TGE-----C----LRTLSGHTSGVTSV-SFSPDGKRLVSGSEDGTIKVWD