Input parameters:

  Query = ENSMUSP00000107422 (Len=1081)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107422, Len=1081):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPATQKPMRYGHTEGHTEVCFDDSGSYIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYT 80  
WD40-rpts       (_________________WD 1_________________)(_________________WD 2________________)

Query       81 FPEGVPDGILTRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDIFLASASCDGTV 160 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      161 RVWNISDQTCAVSWPVLQKSNDVVNAKSICRLAWQPKAGKLLAVPVEKSVKLYRRETWSNPFDLSDSSISQTLNIVTWSP 240 
WD40-rpts      ___)          (_________________WD 5_________________)(___________________WD 6__

Query      241 CGQYLAAGAINGLIVVWNVETKDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLENVCDLSGKVSSNKGIINED 320 
WD40-rpts      _________________)   (_________________WD 7_________________)                   

Query      321 DDNDDIMLAADHDLGDDENSVDVTMLKADLSHKEEGDDDQARSIHNLPLIRPQRPFYDGPMPTPRQKPFQSSSTPLHLSH 400 
WD40-rpts                                                                                      

Query      401 RFMVWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLLNAFNYTMGTLSHEAILLACESADELASKLHCLHFSSWDSSKE 480 
WD40-rpts                                                                                      

Query      481 WMVDMPQNEDIEAICLGLGWAAAATTALLLRLFTIGGVQKEVFCLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLL 560 
WD40-rpts                                                  (_________________WD 8______________

Query      561 ELGRKKNQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCVRMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENP 640 
WD40-rpts      ___)      (________________WD 9_______________)                                 

Query      641 QQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQTSTEKGQMEEQFWHSVLFHNYLDYLAKNGYDYEESIKNQAVKEQQEL 720 
WD40-rpts                                                                                      

Query      721 LMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLILAQKLSELAAEKAAELAETQSEEEKEEDFREKLNAGY 800 
WD40-rpts                                                                                      

Query      801 SHTTTEWSRPRVRSQVEDAEDREDTVSEEKPESHNHGQNLFQSANSSDTPALKSGAVFSSSQGWVNPFKVVVSSKEPAVS 880 
WD40-rpts                                                                                      

Query      881 ANSTRSANILDSMNKSSRKSTSLNRMENNEKSPVIKPLTPKPRSKQASAASYFQKRTPQADKTEEVKENPKSSSSDAPAV 960 
WD40-rpts                                                                                      

Query      961 CLQNSENQRPKTGFQMWLEENRSQILSDNPDISDETDIIKEGMIRFRVLSAEERKAWTNKAKGETASDGAEAKKRKRVVS 1040
WD40-rpts                                                                                      

Query     1041 EICETENQEETVKENLDLSKKQKALNLPANQKLSAFAFKQE 1081
WD40-rpts                                               

9 WD40-repeats found in QUERY=ENSMUSP00000107422 (Len=1081):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       7.78  435.84  8.3e-05       30.0%     45.30
  WD 2:  Seg  4    42-80       3.83  272.96  0.01298       15.0%     38.43
  WD 3:  Seg  8    84-122      6.99  403.43  0.00023       30.0%     54.96
  WD 4:  Seg 12   126-164      8.85  480.26  2.1e-05       40.0%     57.98
  WD 5:  Seg 17   175-214      6.01  363.00  0.00080        7.5%     44.02
  WD 6:  Seg 20   215-258      6.47  381.83  0.00044       27.5%     54.20
  WD 7:  Seg 24   262-301      4.61  305.06  0.00481       12.5%     57.02
  WD 8:  Seg 42   525-564      2.94  236.15  0.04014       10.0%     25.00
  WD 9:  Seg 46   571-607      2.85  232.25  0.04519       22.5%     36.62

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     PATQKPMR----YGHTE-GHTEVCFDDSGSYIVTCGSDGDVRMWE
   WD 2   42-80     DLDD-DDP----KSVNV-GEKAFSCALKNGKLVTAVSNNTVQVYT
   WD 3   84-122    -GVPDGIL----TRFTT-NANHVVFNGAGNKIAAGSSDFLVKVVD
   WD 4  126-164    -NSQQQTF----RGHDA-PVLSLSFDPKDIFLASASCDGTVRVWN
   WD 5  175-214    PVLQKSND----VVNAK-SICRLAWQPKAGKLLAVPVEKSVKLYR
   WD 6  215-258    RETWSNPFDLSDSSISQ-TLNIVTWSPCGQYLAAGAINGLIVVWN
   WD 7  262-301    -KDCMERV----KHEKGYAICGLAWHPTCSRICYTDVEGNLGVLE
   WD 8  525-564    LPGPVVSM----AGHGE-QLCIVYHRGTGFDGDQCLGVQLLELGR
   WD 9  571-607    HGDPLPL------TRKS-YLTWLGFSAEGTPCYVDS-EGCVRMLN

   WD40 Template    TGECLRTL----SGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD