Input parameters:

  Query = ENSMUSP00000107065 (Len=596)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000107065, Len=596):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHVTEGAWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80  
WD40-rpts                                                  (___________________________________

Query       81 NQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLAS 160 
WD40-rpts      ___________WD 1_____________________________________________)                   

Query      161 CVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS 240 
WD40-rpts                                                                                      

Query      241 RLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKMKYKRNKIFMEFRKLQSG 320 
WD40-rpts                                                                                      

Query      321 ILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKEMSLQRNTIDLL 400 
WD40-rpts                                                                                      

Query      401 PKLRAMALADRAVFEKGMKAFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELRGKQFPDFVPVDIDTDTI 480 
WD40-rpts                                                                                      

Query      481 PFKDKIREKQRQKLLEQKRKERSENEGRKKFIKNKAWSKQKAKKERKKKMNAKRKKDEGSDIDDEDMEELLNDTRLLKKF 560 
WD40-rpts                                                                                      

Query      561 KKGKITEEEFEKGLLTSAKRTVQLTDLGVSDLEEDS 596 
WD40-rpts                                          

1 WD40-repeats found in QUERY=ENSMUSP00000107065 (Len=596):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    45-141      3.05  240.67  0.03498       20.0%     40.78

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-141    KNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVAT

   WD40 Template    TGECLRTLSGHTS------------------------GVTSVSFSPD---------------------GKRLVSGSED------------GTIKVWD