Input parameters:

  Query = ENSMUSP00000106984 (Len=296)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106984, Len=296):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIWNFGIKDKPIFLKGIGAGGSITGLKFNHLNTNQFFASSMEGTTRLQDFKGNILRVYTSSNSCKVWFCSLDVSAKSRVV 80  
WD40-rpts              (__________________WD 1_________________)   (__________________WD 2_____

Query       81 VTGDNMGHVILLSTDGKELWNLRMHKKKVAHVALNPCCDWLLATASIDQTVKIWDLRQIKGKDSFLYSLPHRHPVNAACF 160 
WD40-rpts      ____________)  (_________________WD 3_________________)        (________________

Query      161 SPDGARLLTTDQNNEIRVYSASQWDSPLNLISHPHRHFQHLTPIKATWHSRHNLIVVGRYPDPNLKSCVPYELRTIDVFD 240 
WD40-rpts      WD 4_______________)          (______________________WD 5______________________)

Query      241 GSSGKMMCQLYDPGYSGITSLNEFNPMGDTLASTMGYHILIWSQEEDGSQKDHERL 296 
WD40-rpts         (_________________WD 6_________________)             

6 WD40-repeats found in QUERY=ENSMUSP00000106984 (Len=296):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-49       7.14  409.60  0.00019       17.5%     56.81
  WD 2:  Seg  5    53-93       7.06  406.19  0.00021       17.5%     56.92
  WD 3:  Seg  9    96-135      8.68  473.03  2.6e-05       35.0%     56.73
  WD 4:  Seg 13   144-180      8.94  483.85  1.9e-05       27.5%     42.41
  WD 5:  Seg 17   191-240      6.01  363.10  0.00080       17.5%     52.89
  WD 6:  Seg 21   244-283      6.54  384.78  0.00041       25.0%     52.32

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-49     DK---------PIFLKG--IGAGGSI--TGLKFNHLNTN-QFFASSMEG-TTRLQD
   WD 2   53-93     -N---------ILRVYT--SSNSCKVWFCSLDVSA-KSR-VVVTGDNMG-HVILLS
   WD 3   96-135    -G---------KELWNL--RMHKKKV--AHVALNP-CCDWLLATASIDQ-TVKIWD
   WD 4  144-180    S------------FLYS--LPHRHPV--NAACFSP-DGA-RLLTTDQNN-EIRVYS
   WD 5  191-240    ISHPHRHFQHLTPIKAT--WHSRHNL--IVVGRYP-DPN-LKSCVPYELRTIDVFD
   WD 6  244-283    -G---------KMMCQLYDPGYSGIT--SLNEFNP-MGD-TLASTM-GY-HILIWS

   WD40 Template    TG---------ECLRTL--SGHTSGV--TSVSFSP-DGK-RLVSGSEDG-TIKVWD