Input parameters:

  Query = ENSMUSP00000106742 (Len=1170)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106742, Len=1170):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSNLSMNQNLEGHSGAVQVVTWN 80  
WD40-rpts      (__________________WD 1__________________)                  (_________________WD

Query       81 EQYQKLTTSDQNGLIIVWMLYKGSWYEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGSVDGNRIWGKDLKGIQLC 160 
WD40-rpts       2________________)(___________________WD 3___________________)  (______________

Query      161 HVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKLNCLVNVTGAISIAGIHWYHGTEGYVEPDCPCLAICFDNGRCQIMR 240 
WD40-rpts      ___WD 4________________)            (___________________WD 5___________________)

Query      241 HENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIVQFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIAL 320 
WD40-rpts        (_________________WD 6________________)           (________________WD 7_______

Query      321 AVDSFIYFANIRPDYKWGYCSNTVVYAYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCILATKADENHPQFV 400 
WD40-rpts      _________)                                (_________________WD 8________________

Query      401 LVLCNSIGTPLDPKYIDLVPLFVAMTKTHVIAASKEAFYTWQYRVAKKLTALEINQITRSRKEGRERIYHVDDVPSGSVD 480 
WD40-rpts      )                                                                               

Query      481 GVFDYSKAIQGTRDPICAITASDKTLIVGRESGVIQRYSFPNVALIQKYSLDCRACQLSLNCNSSRLAIIDIAGVLTFFD 560 
WD40-rpts                                               (_________________WD 9________________)

Query      561 LDTRVTDSTGQQVVGELLKLERKDVWDMKWAKDNPDLFAMMEKTRMYVFRNLDPEEPIQTSGYICNFEDLEIKSVLLDEI 640 
WD40-rpts                      (______________WD10______________)                              

Query      641 LKDPEHPSKDYIMNFEIRSLRDSRALIEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFV 720 
WD40-rpts                                                                                      

Query      721 KLLGNLQSESMKQAEVIAYFGRFEDAERMYQDMDRRDLAIGLRMKLGDWFRVLQLLKTGSGDADDSLLEQANNAIGEYFA 800 
WD40-rpts                                                                                      

Query      801 DRQKWQNAVQYYVKGRNQERLAECYYMLEDYEGLETLANSLPENHKLLPEIAQMFVRVGMCEQAVSAFLKCNQPKAAVDT 880 
WD40-rpts                                                                                      

Query      881 CVHLNQWNKAVELAKSHSMKEIGSLLARYASHLLEKNKTLDAIELYRKASYFFDAAKLMYKIADEEAKKRTKPLRVKKLY 960 
WD40-rpts                                                                                      

Query      961 VLSALLIEQYHEQMKNAQRGKVKGKNSEATSALAGLLEEEVLSTTSRFTDNAWRGAEAYHFFILAQRQLYEGYVDTALKT 1040
WD40-rpts                                                                                      

Query     1041 ALHLRDYEDIIPSVEIYSLLALCACASRAFGTCSKAFIKLESLETLSAEQKQQYEDLALEIFTKHTPKDNRKSELNSLLE 1120
WD40-rpts                                                                                      

Query     1121 GGEGKLPTCIATGSPIIEYQFWVCKVCKHYVLAQEISNYNFCPLCHSSVE 1170
WD40-rpts                                                        

10 WD40-repeats found in QUERY=ENSMUSP00000106742 (Len=1170):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       5.81  354.49  0.00104       22.5%     55.64
  WD 2:  Seg  5    61-99       6.49  382.82  0.00043       25.0%     46.74
  WD 3:  Seg  8   100-143      5.45  339.72  0.00164       25.0%     50.60
  WD 4:  Seg 12   146-184      5.99  362.14  0.00082       25.0%     55.29
  WD 5:  Seg 17   197-240      2.89  234.06  0.04278       15.0%     34.33
  WD 6:  Seg 20   243-281      3.27  249.61  0.02661       10.0%     37.24
  WD 7:  Seg 25   293-330      4.75  310.74  0.00404       25.0%     55.12
  WD 8:  Seg 32   363-401      3.13  243.78  0.03181       10.0%     36.27
  WD 9:  Seg 45   522-560      4.16  286.59  0.00852       15.0%     50.44
  WD10:  Seg 49   577-610      2.97  237.51  0.03852       15.0%     41.32

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MFF----YL--SKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLR
   WD 2   61-99     -LS----MN----QNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWM
   WD 3  100-143    LYK----GSWYEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGS
   WD 4  146-184    -GN----RI----WGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYD
   WD 5  197-240    CLVNVTGAI----SIAGIHWYHGTEGYVEPDCPCLAICFDNGRCQIMR
   WD 6  243-281    -ND----QN----PVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDK
   WD 7  293-330    -GE----HL----GTLKVPGKQMCSLSWEGGGLKIALAV-DSFIYFAN
   WD 8  363-401    T-K----NS----EKYVKYVKSLISITTCGDFCILATKADENHPQFVL
   WD 9  522-560    -NV----AL----IQKYSLDCRACQLSLNCNSSRLAIIDIAGVLTFFD
   WD10  577-610    --------------LLKLERKDVWDMKWAKDNPDLFAMMEKTRMYVFR

   WD40 Template    TGE----CL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD