Input parameters:

  Query = ENSMUSP00000106682 (Len=514)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106682, Len=514):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDG 80  
WD40-rpts                                                                                      

Query       81 KVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQ 160 
WD40-rpts                                                                                      

Query      161 AVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPD 240 
WD40-rpts                                           (_________________WD 1________________)    

Query      241 THLLKLLKTLEGHAYGVSYIAWSPDDSYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQR 320 
WD40-rpts         (__________________WD 2_________________)   (_________________WD 3___________

Query      321 GQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVAT 400 
WD40-rpts      ______)  (________________WD 4_______________)(__________________WD 5___________

Query      401 QGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPS 480 
WD40-rpts      ______)   (__________________WD 6__________________)   (_________________WD 7___

Query      481 MMASASDDGTVRIWGPAPFIDHQNIEEECSSMDS 514 
WD40-rpts      ______________)                   

7 WD40-repeats found in QUERY=ENSMUSP00000106682 (Len=514):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   198-236      8.93  483.48  1.9e-05       32.5%     51.62
  WD 2:  Seg  7   244-284      8.23  454.55  4.7e-05       35.0%     52.96
  WD 3:  Seg 11   288-327      8.55  468.00  3.1e-05       40.0%     55.93
  WD 4:  Seg 15   330-366      6.73  392.63  0.00032       17.5%     52.99
  WD 5:  Seg 19   367-407      7.63  429.86  0.00010       15.0%     53.69
  WD 6:  Seg 23   411-452      7.41  420.91  0.00013       27.5%     53.65
  WD 7:  Seg 27   456-495      8.75  475.91  2.4e-05       35.0%     53.18

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  198-236    -CYTQ-QILT-EHCNE---VWFCKFSND-GTKLATGSKDTT--VIIWQ
   WD 2  244-284    -LKLL-KTLE-GHAYG---VSYIAWSPD-DSYLVACGPDDCSELWLWN
   WD 3  288-327    -GELR-TKMSQSHEDS---LTSVAWNPD-GKRFVTGGQRGQ--FYQCD
   WD 4  330-366    -GNLL-DSWE-GVR-----VQCLWCLSD-GKTVLASDTHQR--VRGYN
   WD 5  367-407    FEDLTDRNIV-QEDHP---IMSFTISKN-GRLALLNVATQG--VHLWD
   WD 6  411-452    -RVLV-RKYQ-GVTQGFYTIHSCFGGHN-EDFIASGSEDHK--VYIWH
   WD 7  456-495    -ELPI-AELT-GHTRT---VNCVSWNPQIPSMMASASDDGT--VRIWG

   WD40 Template    TGECL-RTLS-GHTSG---VTSVSFSPD-GKRLVSGSEDGT--IKVWD