Input parameters:

  Query = ENSMUSP00000106656 (Len=382)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106656, Len=382):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGCSRPGMGIIPGLGPAARSCLPQPPSRGPQPPPTPPHGPGAMSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLD 80  
WD40-rpts                                                                                  (___

Query       81 PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLD 160 
WD40-rpts      ___________________WD 1_____________________)   (_________________WD 2__________

Query      161 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRT 240 
WD40-rpts      ______)       (________________WD 3________________)   (_________________WD 4___

Query      241 FVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAF 320 
WD40-rpts      _____________)   (_________________WD 5________________)(___________________WD 6

Query      321 SRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 382 
WD40-rpts      ___________________)   (_________________WD 7________________)

7 WD40-repeats found in QUERY=ENSMUSP00000106656 (Len=382):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    77-125      9.61  511.64  7.9e-06       37.5%     49.69
  WD 2:  Seg  7   129-167      8.77  476.94  2.3e-05       15.0%     56.75
  WD 3:  Seg 11   175-212      7.14  409.77  0.00019       30.0%     50.09
  WD 4:  Seg 15   216-254     10.47  547.08  2.6e-06       42.5%     55.02
  WD 5:  Seg 19   258-296     10.27  538.85  3.4e-06       35.0%     52.96
  WD 6:  Seg 23   297-340      8.60  469.79  2.9e-05       30.0%     55.23
  WD 7:  Seg 27   344-382      9.92  524.47  5.3e-06       30.0%     47.76

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   77-125    AGLDPVGRIQMR----TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 2  129-167    -T---------N----KVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
   WD 3  175-212    -V---------R----VSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCALWD
   WD 4  216-254    -G---------Q----QTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD
   WD 5  258-296    -S---------M----CRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD
   WD 6  297-340    LR---------ADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD
   WD 7  344-382    -G---------D----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN

   WD40 Template    TG---------E----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD