Input parameters:

  Query = ENSMUSP00000106652 (Len=296)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106652, Len=296):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIY 80  
WD40-rpts      (_________________WD 1________________)   (_________________WD 2________________

Query       81 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGAC 160 
WD40-rpts      )       (________________WD 3________________)   (_________________WD 4_________

Query      161 DASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRL 240 
WD40-rpts      _______)   (_________________WD 5________________)(___________________WD 6______

Query      241 LLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 296 
WD40-rpts      _____________)   (_________________WD 7________________)

7 WD40-repeats found in QUERY=ENSMUSP00000106652 (Len=296):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       9.93  524.67  5.3e-06       35.0%     51.49
  WD 2:  Seg  5    43-81       8.83  479.38  2.2e-05       15.0%     56.60
  WD 3:  Seg  9    89-126      7.10  408.08  0.00020       30.0%     51.54
  WD 4:  Seg 13   130-168     10.47  546.95  2.6e-06       42.5%     56.28
  WD 5:  Seg 17   172-210     10.31  540.38  3.2e-06       35.0%     54.04
  WD 6:  Seg 21   211-254      8.59  469.34  2.9e-05       30.0%     56.86
  WD 7:  Seg 25   258-296      9.94  525.13  5.2e-06       30.0%     49.97

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -MR----TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 2   43-81     -TN----KVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
   WD 3   89-126    -VR----VSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCALWD
   WD 4  130-168    -GQ----QTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD
   WD 5  172-210    -SM----CRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD
   WD 6  211-254    LRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD
   WD 7  258-296    -GD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD