Input parameters:

  Query = ENSMUSP00000106492 (Len=594)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106492, Len=594):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQRPPVQPQVCSLSQVSKSCVLYRGERGNIMIWDTRCNKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLAPAVDS 80  
WD40-rpts      (______________WD 1______________)(________________WD 2________________)________

Query       81 QQSVTVVLFQDENTLVSAGAVDGIIKVWDLRKNYTAYRQEPIASKSFLYPGTSTRKLGYSSLVLDSTGSTLFANCTDDNI 160 
WD40-rpts      ________WD 3________________)                (_________________WD 4_____________

Query      161 YMFNMTGLKTSPVAVFNGHQNSTFYVKSSLSPDDQFLISGSSDEAAYIWKVSMPWHPPTVLLGHSQEVTSVCWCPSDFTK 240 
WD40-rpts      ___)     (__________________WD 5_________________)    (_________________WD 6____

Query      241 IATCSDDNTLKIWRLNRGLEEKPGDKHSIVGWTSQKKKEVKACPVTVPSSQSTPAKAPRAKSSPSISSPSSAACTPSCAG 320 
WD40-rpts      _____________)   (__________________WD 7__________________)________________WD 8_

Query      321 DLPLPSSTPTFSVKTTPATTRSSVSRRGSISSVSPKPLSSFKMSLRNWVTRTPSSSPPVTPPASETKISSPRKALIPVSQ 400 
WD40-rpts      _______________)   (_______________________WD 9_______________________)         

Query      401 KSSQADACSESRNRVKRRLDSSCLESVKQKCVKSCNCVTELDGQAESLRLDLCCLSGTQEVLSQDSEGPTKSSKTEGAGT 480 
WD40-rpts                                                                                      

Query      481 SISEPPSPVSPYASEGCGPLPLPLRPCGEGSEMVGKENSSPENKNWLLAIAAKRKAENSSPRSPSSQTPSSRRQSGKTSP 560 
WD40-rpts                                                                                      

Query      561 GPVTITPSSMRKICTYFRRKTQDDFCSPEHSTEL 594 
WD40-rpts                                        

9 WD40-repeats found in QUERY=ENSMUSP00000106492 (Len=594):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       4.47  299.17  0.00577       22.5%     36.47
  WD 2:  Seg  4    35-72       3.98  278.87  0.01082       12.5%      7.61
  WD 3:  Seg  5    71-109      8.33  458.78  4.1e-05       32.5%     51.56
  WD 4:  Seg 10   126-164      7.53  425.63  0.00011       17.5%     40.67
  WD 5:  Seg 13   170-210      8.02  446.03  6.1e-05       32.5%     49.64
  WD 6:  Seg 17   215-254      8.34  459.34  4.0e-05       35.0%     48.65
  WD 7:  Seg 20   258-299      5.38  336.96  0.00179       15.0%     14.91
  WD 8:  Seg 23   298-336      5.23  330.56  0.00218       10.0%     17.13
  WD 9:  Seg 24   340-391      3.05  240.81  0.03484       17.5%      5.69

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -----MQRPPVQPQVCS-------------L--SQVS-KSCVL---YRGE-RGNIMIWD
   WD 2   35-72     TR--CNKKDGFYRQVNQ-------------I--SGAH-NTADK---QTPSKPKKKQNSK
   WD 3   71-109    -SKGLAPAVDSQQSVTV-------------V--LFQD-ENTLV---SAGAVDGIIKVWD
   WD 4  126-164    -SFLYPGTSTRKLGYSS-------------L--VLDS-TGSTL---FANCTDDNIYMFN
   WD 5  170-210    -TSPVAVFNGHQNSTFY-------------VKSSLSP-DDQFL---ISGSSDEAAYIWK
   WD 6  215-254    -WHPPTVLLGHSQEVTS-------------V--CWCPSDFTKI---ATCSDDNTLKIWR
   WD 7  258-299    -GLEEKPGDKHSIVGWT-------------S--QKKK-EVKACPVTVPSSQSTPAKAPR
   WD 8  298-336    -PRAKSSPSISSPSSAA-------------C--TPSC-AGDLP---LPSSTPTFSVKTT
   WD 9  340-391    -TRSSVSRRGSISSVSPKPLSSFKMSLRNWV--TRTP-SSSPP---VTPPASETKISSP

   WD40 Template    TGECLRTLSGHTSGVTS-------------V--SFSP-DGKRL---VSGSEDGTIKVWD