Input parameters:

  Query = ENSMUSP00000106405 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106405, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRK 80  
WD40-rpts      (_________________WD 1________________)  (___________________WD 2_______________

Query       81 LKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGS 160 
WD40-rpts      ____)(__________________WD 3_________________)   (__________________WD 4________

Query      161 ASIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240 
WD40-rpts      _________)   (_________________WD 5_________________)(____________________WD 6__

Query      241 DGMFLSASSNTETVHIFKLEAVREKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLTT 320 
WD40-rpts      _________________)(_________________WD 7________________)           (___________

Query      321 IQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGSMETTSEIVDSASHDCPLATQTYGTAAAKAYTDDLGAVGGA 400 
WD40-rpts      __WD 8_____________)                                         (________________WD

Query      401 CLEDEASALRLDEDSEHPPMILRTD 425 
WD40-rpts       9________________)      

9 WD40-repeats found in QUERY=ENSMUSP00000106405 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.69  391.21  0.00033       15.0%     43.34
  WD 2:  Seg  4    42-85       7.07  406.80  0.00020       17.5%     43.59
  WD 3:  Seg  8    86-126      5.46  340.17  0.00162        5.0%     23.10
  WD 4:  Seg 12   130-170      6.48  382.15  0.00044       20.0%     44.72
  WD 5:  Seg 16   174-213      8.21  453.97  4.7e-05       27.5%     53.87
  WD 6:  Seg 20   214-258      7.31  416.49  0.00015       25.0%     49.89
  WD 7:  Seg 24   259-297      3.09  242.28  0.03330       10.0%      9.32
  WD 8:  Seg 27   309-340      3.70  267.68  0.01527       17.5%     39.53
  WD 9:  Seg 33   382-419      3.93  276.90  0.01149       10.0%      9.05

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MNL-----ASQSG----E-AGAGQLLFANFNQDNTSLAVGS-K--SG-YKFFS
   WD 2   42-85     SVD-----KLEQIYECTD-TEDVCIVERLFSSSLVAIVSLKAP--RK-LKVCH
   WD 3   86-126    FKK-----GTEIC----NYSYSNTILAVKLNRQRLIVCLEESL--YI-HNIRD
   WD 4  130-170    -LH-----TIRET----P-PNPAGLCALSINNDNCYLAYPGSASIGE-VQVFD
   WD 5  174-213    -LR-----AANMI----P-AHDSPLAALAFDASGTKLATASEK--GTVIRVFS
   WD 6  214-258    IPEGQKLFEFRRG----V-KRCVSICSLAFSMDGMFLSASSNT--ET-VHIFK
   WD 7  259-297    -LE-----AVREK----P-PEEPTTWTGYFGKVLMASTSYLPS--QV-TEMFN
   WD 8  309-340    ------------F----C-GHKNICSLTTIQKIP-RLLVGASD--GY-LYMYN
   WD 9  382-419    YG-------TAAA----K-AYTDDLGAVGGACLEDEASALRLD--ED-SEHPP

   WD40 Template    TGE-----CLRTL----S-GHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD