Input parameters:

  Query = ENSMUSP00000106366 (Len=1347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106366, Len=1347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPEQERQVTAKEASRKILSKLALPGRPWEQSMKQSFAFDNVGYEGGLDSTSSSPAATDVVNILGMTCHSCVKSIEDRISS 80  
WD40-rpts                                                                                      

Query       81 LKGIVNIKVSLEQGSATVRYVPSVMNLQQICLQIEDMGFEASAAEGKAASWPSRSSPAQEAVVKLRVEGMTCQSCVSSIE 160 
WD40-rpts                                                                                      

Query      161 GKIRKLQGVVRIKVSLSNQEAVITYQPYLIQPEDLRDHICDMGFEAAIKNRTAPLRLGPIDVNKLESTNLKKETVSPVQI 240 
WD40-rpts                                                                                      

Query      241 SNHFETLGHQGSYLATLPLRIDGMHYMLSQRKGVQQTSISLAEGTGAVLYDPSIVSLDELRTAVEDMGFEVSVNSETFTI 320 
WD40-rpts                                                                                      

Query      321 NPVRNFKSGNSVPQTMGDIAGSVQKMAPDTRGLPTHQGPGHSSETPSSPGATASQKCFVQIKGMTCASCVSNIERSLQRH 400 
WD40-rpts                                                                                      

Query      401 AGILSVLVALMSGKAEVKYDPEIIQSPRIAQLIQDLGFEASVMEDNTVSEGDIELIITGMTCASCVHNIESKLTRTNGIT 480 
WD40-rpts                                                                                      

Query      481 YASVALATSKAHVKFDPEIVGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKTEIKQWKKSFLCSLVFGIPVMGLMVYMLI 560 
WD40-rpts                                                                                      

Query      561 PSSTPQETMVLDHNIIPGLSVLNLIFFILCTFVQFLGGWYFYVQAYKSLRHRSANMDVLIVLATTIAYAYSLVILVVAVA 640 
WD40-rpts                                                                                      

Query      641 EKAEKSPVTFFDTPPMLFVFIALGRWLEHVAKSKTSEALAKLMSLQATEATVVTLGEDNLILREEQVPMELVQRGDVIKV 720 
WD40-rpts                                                                                      

Query      721 VPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSIVIAGSINAHGSVLLKATHVGNDTTLAQIVKLVEEAQMSKAPI 800 
WD40-rpts                                                                                      

Query      801 QQLADRFSGYFVPFIIIISTLTLVVWIVIGFVDFGVVQKYFPSPSKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPT 880 
WD40-rpts                                                                                      

Query      881 AVMVGTGVAAQNGVLIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRFLLLADVATLPLRKVLAVVGTAEASSEHPLGV 960 
WD40-rpts                                                                                      

Query      961 AVTKYCKEELGTETLGYSTDFQAVPGCGISCKVSNVEGILARSDLTAHPVGVGNPPTGEGAGPQTFSVLIGNREWMRRNG 1040
WD40-rpts                                                                                      

Query     1041 LTISSDISDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKPEAALAIYTLKSMGVDVALITGDNRKTARAIATQVGINK 1120
WD40-rpts                                                           (__________________________

Query     1121 VFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTV 1200
WD40-rpts      _________________WD 1___________________________________________)               

Query     1201 RRIRVNLVLALIYNMVGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYRKPDLERYEAQAHGRMKPLSAS 1280
WD40-rpts                                                                                      

Query     1281 QVSVHIGMDDRRRDSPRATAWDQVSYVSQVSLSSLTSDRLSRHGGAAEDGGDKWSLLLSDRDEEQCI 1347
WD40-rpts                                                                         

1 WD40-repeats found in QUERY=ENSMUSP00000106366 (Len=1347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 30  1094-1185     3.53  260.49  0.01906       20.0%     17.94

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1094-1185   MGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRND

   WD40 Template    TGECLRTLSGHT-----------------SGVTS----------------VSFSPDGKR----------LVSGS---------EDGTIKVWD