Input parameters:

  Query = ENSMUSP00000106288 (Len=376)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106288, Len=376):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAG 160 
WD40-rpts           (_________________WD 3________________)  (___________________WD 4__________

Query      161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMALSFS 240 
WD40-rpts      _________)                     (_________________WD 5________________)       (__

Query      241 VATLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSSQRGMTARERFQNLDKKASSEGGAA 320 
WD40-rpts      ______________WD 6________________)   (_______________________________________WD

Query      321 TGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIK 376 
WD40-rpts       7_______________________________________)              

7 WD40-repeats found in QUERY=ENSMUSP00000106288 (Len=376):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.39  378.50  0.00049        5.0%     40.27
  WD 2:  Seg  4    37-80       8.89  481.83  2.0e-05       25.0%     53.01
  WD 3:  Seg  8    86-124      7.68  431.86  9.4e-05       12.5%     53.32
  WD 4:  Seg 12   127-170      8.77  476.77  2.3e-05       22.5%     53.00
  WD 5:  Seg 16   192-230      7.93  442.10  6.8e-05       32.5%     58.26
  WD 6:  Seg 20   238-275      6.24  372.38  0.00060       17.5%     52.74
  WD 7:  Seg 24   279-362      4.48  299.54  0.00571       15.0%     32.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     ------------MAYHSFLVEPISCHAWNKD---------------------------------------------RTQIAICPNNHEVHIYE
   WD 2   37-80     KSGAKWN----KVHELKEHNGQVTGIDWAPE---------------------------------------------SNRIVTCGTDRNAYVWT
   WD 3   86-124    -W----K----PTLVILRINRAARCVRWAPN---------------------------------------------ENKFAVGSGSRVISICY
   WD 4  127-170    QE----NDWWVCKHIKKPIRSTVLSLDWHPN---------------------------------------------NVLLAAGSCDFKCRIFS
   WD 5  192-230    -G----E----LMFESSSSCGWVHGVCFSAS---------------------------------------------GSRVAWVSHDSTVCLVD
   WD 6  238-275    -S----F----SVATLASETLPLLAVTFITE---------------------------------------------NSLVAAGH-DCFPVLFT
   WD 7  279-362    -A----A----VTLSFGGRLDVPKQSSQRGMTARERFQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD

   WD40 Template    TG----E----CLRTLSGHTSGVTSVSFSPD---------------------------------------------GKRLVSGSEDGTIKVWD