Input parameters:

  Query = ENSMUSP00000106234 (Len=622)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000106234, Len=622):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSKAESEEKAGSKQCPLVQVNEYKENEHIAYTSLRPIQITTLRKTAKVYLYPFSLSNSKLGLLKLSKSPVVNNSSKSV 80  
WD40-rpts                                          (_________________WD 1________________)     

Query       81 VHKKKDRKKTRRKVLTSKMKALSSKADSLLLKSSVDAYTESTRLGPKRTSDSATLSVDAESSDEDSAPGLDDFSGLSPYE 160 
WD40-rpts                                                                                      

Query      161 RKRLRNIRENANFFASLQLAESAARLRGMIKKRESPESKRKRPKKKENEIGCRRSMRLLKVDPLGVSLPASPTQPTLVEE 240 
WD40-rpts                                                                                      

Query      241 EENPLLPPGPLEMIPENQDDSSELLKASLKTWAEMSQTSNEKTKKGLSSIKSYKANLSGMVISEATVRKVTKGAISSVAL 320 
WD40-rpts                                                                  (__________________W

Query      321 HPSEVRTLVAAGAKSGQIGLWDLTQQSEDAMYVFYAHSRYVSCLSFSPTNPAHLLSLSYDGTLRCGDFSSAVFEEVYRNE 400 
WD40-rpts      D 2__________________)     (_________________WD 3_________________)   (_________

Query      401 GNSPSSFDFLNDSSSLLVGHWDGHLSLVDRRTPGTSYEKFFNSSLEKIRTVHVHPLSRQYFVTAGLRDVHVYDARFLKSR 480 
WD40-rpts      ________WD 4________________)     (_________________WD 5________________)       

Query      481 GSQPLISLTEHSKSIASAYFSPVTGNRVVTTCADCKLRVFDSSSISSQLPLLSTIRHNTVTGRWLTRFQAVWDPKQEDCF 560 
WD40-rpts       (_________________WD 6_________________)              (_________________WD 7___

Query      561 IVGSMDHPRRVEVFHESGKNVHSLWGECLVSVCSLSAVHPTRYILAGGNSSGKLHVFMHQET 622 
WD40-rpts      ______________)   (_________________WD 8_________________)    

8 WD40-repeats found in QUERY=ENSMUSP00000106234 (Len=622):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    37-75       3.96  278.23  0.01103       17.5%     23.29
  WD 2:  Seg  4   301-342      8.10  449.40  5.5e-05       22.5%     45.21
  WD 3:  Seg  8   348-387      8.08  448.36  5.6e-05       32.5%     53.02
  WD 4:  Seg 12   391-429      8.42  462.45  3.6e-05       20.0%     55.13
  WD 5:  Seg 16   435-473      7.45  422.54  0.00013       10.0%     47.89
  WD 6:  Seg 19   482-521      8.07  448.19  5.7e-05       32.5%     48.76
  WD 7:  Seg 24   536-575      4.50  300.54  0.00553        7.5%     12.50
  WD 8:  Seg 27   579-618      6.44  380.65  0.00046       20.0%     51.25

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-75     -RPIQITTLRKTAKVYLYP-FSL-SNSK--LGLLKLSKSPVVNN
   WD 2  301-342    VISEATVRKVTKGAISSVA-LHP-SEVRTLVAAGAKSGQIGLWD
   WD 3  348-387    -EDAMYVFYAHSRYVSCLS-FSPTNPAH--LLSLSYDGTLRCGD
   WD 4  391-429    -AVFEEVYRNEGNSPSSFD-FLN-DSSS--LLVGHWDGHLSLVD
   WD 5  435-473    -TSYEKFFNSSLEKIRTVH-VHP-LSRQ--YFVTAGLRDVHVYD
   WD 6  482-521    -SQPLISLTEHSKSIASAY-FSPVTGNR--VVTTCADCKLRVFD
   WD 7  536-575    RHNTVTGRWLTRFQAVWDP-KQE-DCFI--VGSMDHPRRVEVFH
   WD 8  579-618    -KNVHSLWGECLVSVCSLSAVHP-TRYI--LAGGNSSGKLHVFM

   WD40 Template    TGECLRTLSGHTSGVTSVS-FSP-DGKR--LVSGSEDGTIKVWD