WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000106188 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000106188 (Len=3787) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000106188, Len=3787): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSTDSNSLAREFLIDVNQLCNAVVQRAEAREEEEEETHMATLGQYLVHGRGFLLLTKLNSIIDQALTCREELLTLLLSLL 80
WD40-rpts
Query 81 PLVWKIPVQEQQATDFNLPLSSDIILTKEKNSSLQKSTQGKLYLEGSAPSGQVSAKVNLFRKIRRQRKSTHRYSVRDARK 160
WD40-rpts
Query 161 TQLSTSDSEGNSDEKSTVVSKHRRLHALPRFLTQSPKEGHLVAKPDPSATKEQVLSDTMSVENSREVILRQDSNGDILSE 240
WD40-rpts
Query 241 PAALSILSNMNNSPFDLCHVLLSLLEKVCKFDIALNHNSSLALSVVPTLTEFLAGFGDCCNQSDTLEGQLVSAGWTEEPV 320
WD40-rpts
Query 321 ALVQRMLFRTVLHLMSVDVSTAEAMPESLRKNLTELLRAALKIRACLEKQPEPFSPRQKKTLQEVQEGFVFSKYRHRALL 400
WD40-rpts
Query 401 LPELLEGVLQLLISCLQSAASNPFYFSQAMDLVQEFIQHQGFNLFETAVLQMEWLLSRDGVPSEAAEHLKALINSVIKIM 480
WD40-rpts
Query 481 STVKKVKSEQLHHSMCTRKRHRRCEYSHFMQHHRDLSGLLVSAFKNQLSKSPFEETAEGDVQYPERCCCIAVCAHQCLRL 560
WD40-rpts
Query 561 LQQVSLSTTCVQILSGVHSVGICCCMDPKSVIVPLLHAFKLPALKAFQQHILNVLSKLLLDQLGGAELSPRIKKAACNIC 640
WD40-rpts (_____
Query 641 TVDSDQLAKLGETLQGTLCGAGPTSGLPSPSYRFQGILPSSGSEDLLWKWDALEAYQSFVFQEDRLHNIQIANHICNLIQ 720
WD40-rpts __________________________WD 1_______________________________)
Query 721 KGNVVVQWKLYNYIFNPVLQRGVELVHHCQQLSIPSAQTHMCSQLKQYLPQEVLQIYLKTLPVLLKSRVIRDLFLSCNGV 800
WD40-rpts
Query 801 NQIIELNYLDGIRSHSLKAFETLIVSLGEQQKDAAVLDVDGLDIQQELPSLSVGPSLHKQQASSDSPCSLRKFYASLREP 880
WD40-rpts
Query 881 DPKKRKTIHQDVHINTINLFLCVAFLCVSKEADSDRESANESEDTSGYDSTASEPLSHMLPCLSLENVVLPSPECLHHAA 960
WD40-rpts
Query 961 DIWSMCRWIYMLNSVFQKQFHRLGGFQVCHELIFMIIQKLFRSHTEDQGRRQGEMSRNENQELIRISYPELTLKGDVSSA 1040
WD40-rpts
Query 1041 TAPDLGFLRKSADSVRGFQSQPVLPTSAEQIVATESVPGERKAFMSQQSETSLQSIRLLESLLAICLHSARACQQKMELE 1120
WD40-rpts
Query 1121 LPSQGLSVENILCELREHLSQSKVAETELAKPLFDALLRVALGNHSADLGPGDAVTEKSHPSEEELLSQPGDFSEEAEDS 1200
WD40-rpts
Query 1201 QCCSLKLLGEEEGYEADSESNPEDVDTQDDGVELNPEAEGFSGSIVSNNLLENLTHGEIIYPEICMLGLNLLSASKAKLD 1280
WD40-rpts
Query 1281 VLAHVFESFLKIVRQKEKNISLLIQQGTVKILLGGFLNILTQTNSDFQACQRVLVDLLVSLMSSRTCSEDLTLLLRIFLE 1360
WD40-rpts
Query 1361 KSPCTEILLLGIHKIVESDFTMSPSQCLTFPFLHTPSLSNGVLSQKPPGILNSKALGLLRRARISRGKKEADRESFPYRL 1440
WD40-rpts
Query 1441 LSSWHIAPIHLPLLGQNCWPHLSEGFSVSLWFNVEYIHESESAAERGKRVKKRNKPSVLEDSSFEGAEGDRPEVTESINP 1520
WD40-rpts
Query 1521 GDRLIEDGCIHLISLGSKALMIQVWADPHSGTFIFRVCMDSNDDTKAVSLAQVESQENIFFPSKWQHLVLTYIQHPQGKK 1600
WD40-rpts
Query 1601 NVHGEISIWVSGQRKTDVILDFVLPRKTSLSSDSNKTFCMIGHCLTSQEESLQLAGKWDLGNLLLFNGAKIGSQEAFFLY 1680
WD40-rpts
Query 1681 ACGPNYTSIMPCKYGQPVIDYSKYINKDILRCDEIRDLFMTKKEVDVGLLIESLSVVYTTCCPAQYTIYEPVIRLKGQVK 1760
WD40-rpts
Query 1761 TQPSQRPFSSKEAQSILLEPSQLKGLQPTECKAIQGILHEIGGAGTFVFLFARVVELSSCEETQALALRVILSLIKYSQQ 1840
WD40-rpts
Query 1841 RTQELENCNGLSMIHQVLVKQKCIVGFHILKTLLEGCCGEEVIHVSEHGEFKLDVESHAIIQDVKLLQELLLDWKIWNKA 1920
WD40-rpts
Query 1921 EQGVWETLLAALEVLIRVEHHQQQFNIKQLLNAHVVHHFLLTCQVLQEHREGQLTSMPREVCRSFVKIIAEVLGSPPDLE 2000
WD40-rpts
Query 2001 LLTVIFNFLLAVHPPTNTYVCHNPTNFYFSLHIDGKIFQEKVQSLAYLRHSSSGGQAFPSPGFLVISPSAFTAAPPEGTS 2080
WD40-rpts
Query 2081 SSNIVPQRMAAQMVRSRSLPAFPTYLPLIRAQKLAASLGFSVDKLQNIADANPEKQNLLGRPYALKTSKEEAFISSCESA 2160
WD40-rpts
Query 2161 KTVCEMEALLGAHASANGVSRGSPRFPRARVDHKDVGTEPRSDDDSPGDESYPRRPDNLKGLASFQRSQSTVASLGLAFP 2240
WD40-rpts
Query 2241 SQNGSAVASRWPSLVDRNADDWENFTFSPAYEASYNRATSTHSVIEDCLIPICCGLYELLSGVLLVLPDAMLEDVMDRII 2320
WD40-rpts
Query 2321 QADILLVLVNHPSPAIQQGVIKLLHAYINRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFVEMFFGRPIGLDEEF 2400
WD40-rpts
Query 2401 DLEEVKHMELFQKWSVIPVLGLIETSLYDNVLLHNALLLLLQVLNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPVN 2480
WD40-rpts
Query 2481 EYKLLACDIQQLFIAVTIHACSSSGTQYFRVIEDLIVLLGYLHNSKNKRTQNMALALQLRVLQAALEFIRSTANHDSESP 2560
WD40-rpts
Query 2561 VHSPSAHRHSVPPKRRSIAGSRKFPLAQTESLLMKMRSVASDELHSMMQRRMSQEHPSQASEAELAQRLQRLTILAVNRI 2640
WD40-rpts
Query 2641 IYQELNSDIIDILRTPENTSQSKTSVSQTEISEEDMHHEQPSVYNPFQKEMLTYLLDGFKVCIGSSKTSVSKQQWTKILG 2720
WD40-rpts
Query 2721 SCKETLRDQLGRLLAHILSPTHTVQERKQILEIVHEPAHQDILRDCLSPSPQHGAKLVLYLSELIHNHQDELSEEEMDTA 2800
WD40-rpts
Query 2801 ELLMNALKLCGHKCIPPSAPSKPELIKIIREEQKKYESEESVSKGSWQKTVNNNQQSLFQRLDFKSKDISKIAADITQAV 2880
WD40-rpts
Query 2881 SLSQGIERKKVIQHIRGMYKVDLSASRHWQECIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYL 2960
WD40-rpts
Query 2961 LRDRQKSEGVLRPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDAVESS 3040
WD40-rpts
Query 3041 SLQGELEPASFSWTYEEIKEVHRRWWQLRDNAVEIFLTNGRTLLLAFDNNKVRDDVYQSILTNNLPNLLEYGNITALTNL 3120
WD40-rpts
Query 3121 WYSGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLSKPIAVQYKEKEDRYVDTYKYLEEE 3200
WD40-rpts
Query 3201 YRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELI 3280
WD40-rpts
Query 3281 PEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDHVSQNICHWIDLVFGYKQKGKASVQA 3360
WD40-rpts
Query 3361 INVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFHTAHASRPGAKLNIEGELPAAVGLLVQFAFRETREPVKE 3440
WD40-rpts
Query 3441 VTHPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYNKEQGVRSMNNTNIQWS 3520
WD40-rpts
Query 3521 AILSWGYADNILRLKSKQSEPPINFIQSSQQHQVTSCAWVPDSCQLFTGSKCGVITAYTNRLTSSTPSEIEMESQMHLYG 3600
WD40-rpts (___________________WD 2__________________)(____________________
Query 3601 HTEEITGLCVCKPYSVMISVSRDGTCIVWDLNRLCYVQSLAGHKSPVTAVSASETSGDIATVCDSAGGGSDLRLWTVNGD 3680
WD40-rpts ___WD 3______________________)(____________________WD 4____________________)(___
Query 3681 LVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIISLTFSCDGHHLYTANSEGT 3760
WD40-rpts _________________WD 5___________________) (_______________WD 6___________
Query 3761 VIAWCRKDQQRVKLPMFYSFLSSYAAG 3787
WD40-rpts ____)
 6 WD40-repeats found in QUERY=ENSMUSP00000106188 (Len=3787): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 635-702 4.66 307.07 0.00452 35.0% -8.09 WD 2: Seg 46 3537-3579 4.39 295.90 0.00639 27.5% 52.66 WD 3: Seg 50 3580-3630 5.93 359.49 0.00089 35.0% 54.81 WD 4: Seg 54 3631-3676 3.67 266.42 0.01588 27.5% 45.48 WD 5: Seg 58 3677-3721 3.12 243.72 0.03187 22.5% 49.48 WD 6: Seg 62 3730-3765 4.60 304.48 0.00490 25.0% 49.31Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 635-702 AA-----------C---N--ICTVDSDQLAKLGETLQGTLCGAGPTSGLPSPSYRFQG-----ILPS----SGSEDLLWKWDALEAYQSFVFQ WD 2 3537-3579 KQ-----------SEPPI--NFIQSS------------------QQHQVTSCAWVPDS-----CQLF----TGSKCGVIT----------AYT WD 3 3580-3630 NRLTSSTPSEIEME---S--QMHLYG------------------HTEEITGLCVCKPY-----SVMI----SVSRDGTCI----------VWD WD 4 3631-3676 LN-----------R---LCYVQSLAG------------------HKSPVTAVSASETS-----GDIATVCDSAGGGSDLR----------LWT WD 5 3677-3721 VN-----------G---D--LVGHVH------------------CREIICSVAFSNQPEGVSINVIA----GGLENGIVR----------LWS WD 6 3730-3765 --------------------EITFPK------------------SNKPIISLTFSCDG-----HHLY----TANSEGTVI----------AWC WD40 Template TG-----------E---C--LRTLSG------------------HTSGVTSVSFSPDG-----KRLV----SGSEDGTIK----------VWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |