Input parameters:

  Query = ENSMUSP00000105959 (Len=1290)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105959, Len=1290):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASSST 80  
WD40-rpts                                                      (_________________WD 1__________

Query       81 DNLVIIWNVAEQKVIAKLDNIKETPACLGWCWNTHDAVAFVSQKGPLLIWTISGPDSGVSVHKEAHSFASDICIFRWHTQ 160 
WD40-rpts      _______)   (_________________WD 2_________________)           (_______________WD

Query      161 KKGKVAFGHIDGSISIFQPGSKNQKHVLRPDSLEGTDEEDPVTALEWDPLSTDYLLVANLHFGIRLLDSESLYCITTFNL 240 
WD40-rpts       3_______________)          (_________________WD 4_________________)   (________

Query      241 PSAAVSVQCLAWVPSAPGMFITGDSQVGVLRIWNVSRTTPIDNFKLKKTGFHCFHVVNSPPKKKFSVQSPNKNHYISSTS 320 
WD40-rpts      ___________WD 5__________________)(___________________WD 6___________________)__

Query      321 EAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNVLATASFDGTIKVWDIN 400 
WD40-rpts      _____________WD 7________________)(___________________WD 8___________________)  

Query      401 TLTAVYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDIQKGKIIQRFNEHGKNGIFYIAWSHKDSKRIATCSGDGF 480 
WD40-rpts       (_________________WD 9_________________)   (__________________WD10_____________

Query      481 CIIRTVDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNIRVFYVATSSNQPLKVFSGHTARVFHVKWSPLREGILCS 560 
WD40-rpts      ____)(__________________WD11_________________)     (_________________WD12_______

Query      561 GSDDGSVRIWDYTQDACVSTLNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRGGVCLDTVYDHGADVYGLTCHPSR 640 
WD40-rpts      __________)   (_________________WD13_________________)   (_________________WD14_

Query      641 PFTMASCSRDSTVRLWSLIPLITPLQINILADRSWDEVIGNTDNAIRQDCPPLLCGKVSRDIKQEVEKLTCNPRAKKLRL 720 
WD40-rpts      ________________)          (_________________WD15________________)              

Query      721 FSECLSPPGGSDNLWNLVSVIKGQDDSLLPQNYCKGMMHLKHLIKFRTSEAQELTTIKMSKFGGGVGAPTKEKKLKEAAE 800 
WD40-rpts                                                                                      

Query      801 IHLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVKKLVNFFVSRGQLKE 880 
WD40-rpts                                                                                      

Query      881 ALLVAQAACEGNMQNAHVSTPKGASNSDDIHKEDFNELLHKVINELAEWYFQDGQAVLAACCHLAVDDIELAMAYLIRGN 960 
WD40-rpts                                                                                      

Query      961 ELELAVSVGTVLGEPAAPAMHYALQLLATKCMMIPMCFPSVVYRNLAADLLLMTPGSEVHLVKLCAFYPGCIEEINDLHK 1040
WD40-rpts                                                                                      

Query     1041 KCNLPPAEECTQLAETARADGNVFETIKYYLLSQEPEKALPIGIDFVKGCISNSNWTLDTVYPVLDLMSYIRTEKLLLHT 1120
WD40-rpts                                                                                      

Query     1121 CTEARNELLILCGYIGALLAIRRQYQSIVPSLYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSTKQSSEDSPYTPP 1200
WD40-rpts                                                                                      

Query     1201 SDSQRTVYETLLKRLKEEPLKGITGLDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSTISLNDALMWAKVNPFSP 1280
WD40-rpts                                                                                      

Query     1281 LGTGIRLNPF 1290
WD40-rpts                

15 WD40-repeats found in QUERY=ENSMUSP00000105959 (Len=1290):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    49-88       6.31  375.40  0.00054       22.5%     51.88
  WD 2:  Seg  8    92-131      5.37  336.62  0.00181       10.0%     55.34
  WD 3:  Seg 13   143-178      4.54  302.39  0.00523       12.5%     39.96
  WD 4:  Seg 17   189-228      5.06  323.62  0.00271       17.5%     44.22
  WD 5:  Seg 20   232-274      4.74  310.28  0.00409       20.0%     52.86
  WD 6:  Seg 24   275-318      5.36  336.19  0.00183       15.0%     52.58
  WD 7:  Seg 27   316-354      5.75  352.23  0.00111       15.0%     37.27
  WD 8:  Seg 31   355-398      7.29  415.83  0.00015       40.0%     53.67
  WD 9:  Seg 35   402-441      6.14  368.43  0.00067       17.5%     57.13
  WD10:  Seg 39   445-485      5.31  333.91  0.00197       25.0%     55.10
  WD11:  Seg 43   486-526      6.59  387.02  0.00038       25.0%     55.45
  WD12:  Seg 47   532-571      8.25  455.62  4.5e-05       42.5%     53.03
  WD13:  Seg 51   575-614      8.15  451.21  5.2e-05       45.0%     55.27
  WD14:  Seg 55   618-657      7.29  415.90  0.00015       30.0%     54.95
  WD15:  Seg 60   668-706      3.58  262.70  0.01781       20.0%     28.52

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-88     -FK---LH----AIMSEHK-K--TITAISWC-P-H--NPD-LFASSSTDNLVIIWN
   WD 2   92-131    -QK---VI----AKLDNIK-E--TPACLGWC-WNT--H-D-AVAFVSQKGPLLIWT
   WD 3  143-178    -------K----EAHSFAS-D--ICIFRWHT-Q-K--K-G-KVAFGHIDGSISIFQ
   WD 4  189-228    RPD---SL-----EGTDEE-D--PVTALEWD-PLS--T-D-YLLVANLHFGIRLLD
   WD 5  232-274    -LY---CI----TTFNLPS-AAVSVQCLAWV-P-SAPG-M-FITGDSQVGVLRIWN
   WD 6  275-318    VSR---TTPIDNFKLKKTG-F--HCFHVVNS-P-P--K-K-KFSVQSPNKNHYISS
   WD 7  316-354    -IS---ST----SEAVPPP-N--LTQNQAFS-L-P--P-G-HVVCCFLDGGVGLYD
   WD 8  355-398    MGAKKWDF----LRELGHV-E--TIFDCKFK-P-D--DPN-VLATASFDGTIKVWD
   WD 9  402-441    -LT---AV----YTSPGNE-G--VIFALSWA-PGD--L-N-CIAGATSRNGAFIWD
   WD10  445-485    -GK---II----QRFNEHGKN--GIFYIAWSHK-D--S-K-RIATCSGDGFCIIRT
   WD11  486-526    VDG---KL----LHKYKHP-A--AVFGCDWS-Q-N--N-KDMIATGCEDKNIRVFY
   WD12  532-571    -NQ---PL----KVFSGHT-A--RVFHVKWS-P-L--R-EGILCSGSDDGSVRIWD
   WD13  575-614    -DA---CV----STLNGHT-A--PVRGLMWN-T-E-IP-Y-LLISGSWDYTIKVWD
   WD14  618-657    -GV---CL----DTVYDHG-A--DVYGLTCH-P-S--R-PFTMASCSRDSTVRLWS
   WD15  668-706    NIL---AD----RSWD-EV-I--GNTDNAIR-Q-D--C-P-PLLCGKVSRDIKQEV

   WD40 Template    TGE---CL----RTLSGHT-S--GVTSVSFS-P-D--G-K-RLVSGSEDGTIKVWD