Input parameters:

  Query = ENSMUSP00000105807 (Len=1061)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105807, Len=1061):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQSTDLGNKESGKIWHRKPSPATHDGIIVNIVHSTSEYHPKVLRFLNVAFDGSGDSFIAGDHQGNIYVFDLHGNRFNLVQ 80  
WD40-rpts                                        (_______________WD 1_______________)  (_______

Query       81 RTAQACTALAFNLRRKSEFLVALADYSIKCFDTVTKELVSWMRGHESSVCSISVHASGRYAITTSSDTAQLWDLDTFQRK 160 
WD40-rpts      __________WD 2_________________)   (________________WD 3________________)(______

Query      161 RKLNIRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLFCKYQLPGPPEGSNILYKVFAVTRDGRILAAGGKSNHLHL 240 
WD40-rpts      _____________WD 4__________________)        (________________WD 5_______________

Query      241 WCLEATGLFRIIQMPAKVRAVRHLEFLPDSFDAGSNQVLGVLSQDGIMRFVNIQTCKLLFEIGTVEEGISSSVISPHGRY 320 
WD40-rpts      _)(______________________WD 6______________________)   (_________________WD 7___

Query      321 IASIMENGSLNVYSVQALTQEINKPPPPLVKVIEDLPSNTVSSSNLKMKIMPGRVQRPARCKESKIPTRVLKQDLTGDLE 400 
WD40-rpts      _____________)                                                                  

Query      401 NKENELSEGLNKKRLQILLKGYGEYPTKYRMFIWRSLLQLPENHTAFSSLVDKGTHAAYLSLQKKYPIKSRKLLRVLQRT 480 
WD40-rpts                                                                                      

Query      481 LSALAHWSAIFSDTPYLPLLAFPFVKLFQNNQLICFEVVATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHF 560 
WD40-rpts                                                                                      

Query      561 IDRDITSQVYAWPLLETLFSEVLTREEWLRLFDNIFSNHPSFLLMTVVAYSTCSRAPLLNCTLKNDFEYFFHHRNNLDIN 640 
WD40-rpts                                                                                      

Query      641 VVIREVYHLMETTPADIHPNSMLDAFVALTKGQYPIFNQYPKFIVDYQTREWERIRNDELDFLRERQTVENMQAEVDEQR 720 
WD40-rpts                                                                                      

Query      721 AKDEAWYQKQELLRRAEETRREILLQEEEKMAQQRQRLAAVKRELEIKEIHLQDAARRRLLKLQQDQREMELRRLEDEIE 800 
WD40-rpts                                                                                      

Query      801 RKVQMRDQEIAATAKDLEIRQLELEAQKRLYEKDLTTSQEAVAKEIREDTDAHRRKAALEEHMFQKLLENSQMGGRRAQR 880 
WD40-rpts                                                                                      

Query      881 VMEDNLAKAEQACLNADWQIQTLHKQKCADQQRSQGYYDVATLLRENRRKEVEVLNAMMEEEAQKWKEAEEKEFHLQSAK 960 
WD40-rpts                                                                                      

Query      961 KASALSDASRKWFLRQETSAALEHEEMPWLQRQYMDSAYLPQTSRLHDVSDMDPSTHIFSRNYPTEWNHMEHDLLKNVRD 1040
WD40-rpts                                                                                      

Query     1041 LRRRLTARARNSCRHPHLLVT 1061
WD40-rpts                           

7 WD40-repeats found in QUERY=ENSMUSP00000105807 (Len=1061):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-70       5.07  323.89  0.00268       25.0%     45.30
  WD 2:  Seg  6    73-112      4.13  285.26  0.00888       20.0%     55.41
  WD 3:  Seg 10   116-153      6.99  403.50  0.00023       32.5%     49.33
  WD 4:  Seg 14   154-196      5.23  330.63  0.00218       22.5%     52.29
  WD 5:  Seg 19   205-242      4.73  309.97  0.00413       15.0%     39.38
  WD 6:  Seg 22   243-292      3.77  270.21  0.01413       20.0%     54.16
  WD 7:  Seg 26   296-334      6.49  382.58  0.00043       25.0%     55.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-70     TSE--------YH---PKVLRFLNVAFDGS------GD-SFIAGDHQGNIYVFD
   WD 2   73-112    -GNR----FNLVQ---RTAQACTALAFNLR------RKSEFLVALADYSIKCFD
   WD 3  116-153    -KEL----VSWMR---GHESSVCSISVHAS------GR-YAITTSSD-TAQLWD
   WD 4  154-196    LDTF----QRKRKLNIRQSVGIQKVFFLPL------SN-TILSCFKDNSIFAWE
   WD 5  205-242    --QL----PGPPE---GSNILYKVFAVTRD------GR-ILAAGGKSNHLHLWC
   WD 6  243-292    LEATGLFRIIQMP---AKVRAVRHLEFLPDSFDAGSNQ-VLGVLSQDGIMRFVN
   WD 7  296-334    -CKL----LFEIG---TVEEGISSSVISPH------GR-YIASIMENGSLNVYS

   WD40 Template    TGEC----LRTLS---GHTSGVTSVSFSPD------GK-RLVSGSEDGTIKVWD