Input parameters:

  Query = ENSMUSP00000105803 (Len=675)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105803, Len=675):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGHESSVCSISVHASGRYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLF 80  
WD40-rpts      (_____________WD 1_____________)(___________________WD 2__________________)   (_

Query       81 CKYQLPGPPEGSNILYKVFAVTRDGRILAAGGKSNHLHLWCLEATGLFRIIQMPAKVRAVRHLEFLPDSFDAGSNQVLGV 160 
WD40-rpts      __________________WD 3__________________)(______________________WD 4____________

Query      161 LSQDGIMRFVNIQTCKLLFEIGTVEEGISSSVISPHGRYIASIMENGSLNVYSVQALTQEINKPPPPLVKVIEDLPSNTV 240 
WD40-rpts      __________)   (_________________WD 5________________)(_________________WD 6_____

Query      241 SSSNLKMKIMPGRVQRPARCKESKIPTRVLKQDLTGDLENKENELSEGLNKKRLQILLKGYGEYPTKYRMFIWRSLLQLP 320 
WD40-rpts      ____________)                                                                   

Query      321 ENHTAFSSLVDKGTHAAYLSLQKKYPIKSRKLLRVLQRTLSALAHWSAIFSDTPYLPLLAFPFVKLFQNNQLICFEVVAT 400 
WD40-rpts                                                                                      

Query      401 LIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHFIDRDITSQVYAWPLLETLFSEVLTREEWLRLFDNIFSNHPS 480 
WD40-rpts                                                                                      

Query      481 FLLMTVVAYSTCSRAPLLNCTLKNDFEYFFHHRNNLDINVVIREVYHLMETTPADIHPNSMLDAFVALTKGQYPIFNQYP 560 
WD40-rpts                                                                                      

Query      561 KFIVDYQTREWERIRNDELDFLRERQTVENMQAEVDEQRAKDEAWYQKQELLRRAEETRREILLQEEEKMAQQRQRCGPH 640 
WD40-rpts                                                                                      

Query      641 DPAKTHDLLKNVRDLRRRLTARARNSCRHPHLLVT 675 
WD40-rpts                                         

6 WD40-repeats found in QUERY=ENSMUSP00000105803 (Len=675):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       6.09  366.34  0.00072       30.0%     39.02
  WD 2:  Seg  4    33-75       5.53  343.17  0.00148       22.5%     51.88
  WD 3:  Seg  8    79-121      4.89  316.78  0.00335       22.5%     55.70
  WD 4:  Seg 12   122-171      4.12  284.96  0.00896       20.0%     55.76
  WD 5:  Seg 16   175-213      7.02  404.48  0.00022       25.0%     56.87
  WD 6:  Seg 20   214-253      5.66  348.62  0.00125        7.5%     32.09

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     -----------MR---GHESS----VCSISVHAS------GRYAITTSSD-TAQLWD
   WD 2   33-75     LDTF----QRKRKLNIRQSVG----IQKVFFLPL------SNTILSCFKDNSIFAWE
   WD 3   79-121    -LFC----KYQLP---GPPEGSNILYKVFAVTRD------GRILAAGGKSNHLHLWC
   WD 4  122-171    LEATGLFRIIQMP---AKVRA----VRHLEFLPDSFDAGSNQVLGVLSQDGIMRFVN
   WD 5  175-213    -CKL----LFEIG---TVEEG----ISSSVISPH------GRYIASIMENGSLNVYS
   WD 6  214-253    VQAL----TQEIN---KPPPP----LVKVIEDLP------SNTVSSSNLKMKIMPGR

   WD40 Template    TGEC----LRTLS---GHTSG----VTSVSFSPD------GKRLVSGSEDGTIKVWD