Input parameters:

  Query = ENSMUSP00000105432 (Len=539)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105432, Len=539):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEGGGKEMNEIKTQFTTREGLYKLLQHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDRLCFNVGRELYFYIYKG 80  
WD40-rpts                  (_________________WD 1_________________)  (_____________WD 2________

Query       81 VRKAADLSKPIDKRIYKGTQPTCHDFNLLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPG 160 
WD40-rpts      _____)   (__________________WD 3__________________)                             

Query      161 SESLFLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQ 240 
WD40-rpts                 (_______________WD 4______________)   (_________________WD 5_________

Query      241 DGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGHGHKSWVSVVAFDPYTTSVE 320 
WD40-rpts      _______)   (_________________WD 6________________)   (____________________WD 7__

Query      321 ESDPMEFSGSDEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPPLSRARTHTNVMNATSPPAGSNGNSVTTPGNSVPPPLP 400 
WD40-rpts      __________________)                                          (_________________W

Query      401 RSNSLPHSAVSNAASKGSVMDGAIASGVSKFATLSLHDRKERHHEKDHKRNHSMGHISSKSSDKLNLVTKAKTDPAKTLG 480 
WD40-rpts      D 8________________)                     (_________________WD 9________________)

Query      481 TSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVVSFNP 539 
WD40-rpts                  (________________WD10_______________)          

10 WD40-repeats found in QUERY=ENSMUSP00000105432 (Len=539):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       5.41  337.94  0.00174       10.0%     14.29
  WD 2:  Seg  4    55-86       3.42  255.87  0.02197       17.5%     42.23
  WD 3:  Seg  7    90-131      6.18  370.01  0.00064       15.0%     55.48
  WD 4:  Seg 14   172-206      5.13  326.61  0.00247       10.0%     33.44
  WD 5:  Seg 18   210-248      9.01  486.88  1.7e-05       30.0%     54.58
  WD 6:  Seg 22   252-290      9.85  521.39  5.8e-06       37.5%     55.82
  WD 7:  Seg 26   294-339      6.91  399.90  0.00025       25.0%     40.82
  WD 8:  Seg 30   382-420      5.19  329.06  0.00229        7.5%      6.42
  WD 9:  Seg 34   442-480      3.78  270.84  0.01386       17.5%     22.85
  WD10:  Seg 36   493-529      4.99  320.70  0.00296       22.5%     45.25

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     IKTQFTTREGLYK---LLQHSEYSRPNRVPF-------NSQGSNPVRVSF
   WD 2   55-86     -------LNDQSG---NGDRLCFNV-GRELY-------FYIYKGVRKAAD
   WD 3   90-131    -PIDKRIYKGTQPTCHDFNLLTATAESVSLL-------VGFSAGQVQLID
   WD 4  172-206    -----GNMYLYNV---EHTCGTTAPHYQLLK-------QGESFAVHTCKS
   WD 5  210-248    -RNPLLKWTVGEG---ALNEFAFSPDGKFLA-------CVSQDGFLRVFN
   WD 6  252-290    -VELHGTMKSYFG---GLLCVCWSPDGKYIV-------TGGEDDLVTVWS
   WD 7  294-339    -CRVIARGHGHKS---WVSVVAFDPYTTSVEESDPMEFSGSDEDFQDLLH
   WD 8  382-420    -GSNGNSVTTPGN---SVPPPLPRSNSLPHS-------AVSNAASKGSVM
   WD 9  442-480    -RHHEKDHKRNHS---MGHISSKSSDKLNLV-------TKAKTDPAKTLG
   WD10  493-529    -LEPLICKKIAHE---RLTVLVFLEDC--IV-------TACQEGFICTWA

   WD40 Template    TGECLRTLSGHTS---GVTSVSFSPDGKRLV-------SGSEDGTIKVWD