Input parameters:

  Query = ENSMUSP00000105078 (Len=510)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000105078, Len=510):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKHTLSMLRCFHTKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGTKVASRGGHLERIFVVEFRPDSDTQFVSVGVK 80  
WD40-rpts          (_________________WD 1_________________)   (_________________WD 2___________

Query       81 HMKFWTLAGSALLYKKGVIGSMEAAKMQTMLSVAFGANNLTFTGAINGDVYVWKEHFLIRLVAKAHTGPVFTMYTTLRDG 160 
WD40-rpts      _____)          (________________WD 3________________)(_____________________WD 4

Query      161 LIVTGGKERPTKEGGAVKLWDQEMKRCRAFQLETGQLVECVRSVCRGKGKILVGTKDGEIIEVGEKSAASNILIDGHMEG 240 
WD40-rpts      ____________________)(___________________WD 5___________________)  (____________

Query      241 EIWGLATHPSKDMFISASNDGTARIWDLADKKLLNKVNLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNTLKVWGKKRD 320 
WD40-rpts      _____WD 6_________________)(__________________WD 7_________________)   (________

Query      321 RKSAIQDIRISPDNRFLAVGSSEQTVDFYDLTQGTSLNRIGYCKDIPSFVIQMDFSADSKYIQVSTGAYKRQVHEVPLGK 400 
WD40-rpts      _________WD 8________________)         (_______________WD 9_______________)     

Query      401 QVTEAMVVEKITWASWTSVLGDEVIGIWPRNADKADVNCACVTHAGLNIVTGDDFGLLKLFDFPCTEKFAKHKRYFGHSA 480 
WD40-rpts                    (_____________________WD10_____________________)      (___________

Query      481 HVTNIRFSSDDKYVVSTGGDDCSVFVWRCL 510 
WD40-rpts      ______WD11_________________)  

11 WD40-repeats found in QUERY=ENSMUSP00000105078 (Len=510):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       6.93  400.85  0.00025       40.0%     47.24
  WD 2:  Seg  4    48-86       8.30  457.68  4.2e-05       22.5%     57.96
  WD 3:  Seg  8    97-134      5.85  356.15  0.00099       20.0%     48.42
  WD 4:  Seg 12   135-181      6.85  397.59  0.00027       25.0%     53.20
  WD 5:  Seg 16   182-225      6.86  398.21  0.00027       17.5%     47.43
  WD 6:  Seg 20   228-267      7.31  416.80  0.00015       27.5%     56.46
  WD 7:  Seg 24   268-308      6.99  403.57  0.00023       17.5%     57.82
  WD 8:  Seg 28   312-350      8.52  466.81  3.2e-05       22.5%     58.67
  WD 9:  Seg 33   360-395      6.76  393.71  0.00031       22.5%     48.93
  WD10:  Seg 37   415-462      6.99  403.60  0.00023       17.5%     45.59
  WD11:  Seg 41   469-508      7.46  422.80  0.00012       35.0%     48.68

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     ---------------TLSM-LRCFHTKG-VNYINFSATGKLLVS-VGVD----PEHTITVWR
   WD 2   48-86     -G----T-K--------VA-SRGGHLER-IFVVEFRPDSDTQFV-SVGV------KHMKFWT
   WD 3   97-134    -G----V-I--------GS-MEAAKMQT-MLSVAFGANNL-TFT-GAIN------GDVYVWK
   WD 4  135-181    EH----F-L--------IRLVAKAHTGP-VFTMYTTLRDGLIVT-GGKERPTKEGGAVKLWD
   WD 5  182-225    QEMKRCR-A--------FQ-LETGQLVE-CVRSVCRGKGKILVG-TKDG------EIIEVGE
   WD 6  228-267    -A----A-S--------NI-LIDGHMEGEIWGLATHPSKDMFIS-ASND------GTARIWD
   WD 7  268-308    LA----DKK--------LL-NKVNLGHA-ARCAAYSPDGEMVAI-GMKN------GEFVILL
   WD 8  312-350    -L----K-V--------WG-KKRDRKSA-IQDIRISPDNRFLAV-GSSE------QTVDFYD
   WD 9  360-395    IG----Y-C-------------KDIPSF-VIQMDFSADSKYIQV-STGA------YKRQVHE
   WD10  415-462    SW----T-SVLGDEVIGIW-PRNADKAD-VNCACVTHAGLNIVT-GDDF------GLLKLFD
   WD11  469-508    -F----A-K--------HK-RYFGHSAH-VTNIRFSSDDKYVVSTGGDD------CSVFVWR

   WD40 Template    TG----E-C--------LR-TLSGHTSG-VTSVSFSPDGKRLVS-GSED------GTIKVWD