Input parameters:

  Query = ENSMUSP00000104991 (Len=529)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104991, Len=529):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPDSVIEDKTIELMNTSVMEDQNEDESPKKSALWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVE 80  
WD40-rpts                                                                                      

Query       81 HLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVR 160 
WD40-rpts                                                                                      

Query      161 TDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKI 240 
WD40-rpts                                                      (____________________WD 1_______

Query      241 ISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLM 320 
WD40-rpts      ____________)   (________________WD 2_______________)   (________________WD 3___

Query      321 VTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD 400 
WD40-rpts      ____________)(___________________WD 4__________________)   (________________WD 5

Query      401 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG 480 
WD40-rpts      _______________)   (________________WD 6_______________)            (___________

Query      481 RVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR 529 
WD40-rpts      _____WD 7_______________)                        

7 WD40-repeats found in QUERY=ENSMUSP00000104991 (Len=529):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   209-253      6.58  386.55  0.00038       30.0%     48.81
  WD 2:  Seg  5   257-293      8.90  482.48  2.0e-05       42.5%     48.48
  WD 3:  Seg  9   297-333      8.03  446.55  6.0e-05       40.0%     51.18
  WD 4:  Seg 13   334-376      7.70  432.63  9.2e-05       45.0%     45.15
  WD 5:  Seg 16   380-416      8.56  468.23  3.0e-05       40.0%     51.49
  WD 6:  Seg 20   420-456      9.02  487.23  1.7e-05       55.0%     53.55
  WD 7:  Seg 23   469-505      6.84  397.10  0.00028       40.0%     47.61

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  209-253    NWR-----CGRHNLQRIQCRSENSKGVYCLQY--DDDKIISGLRDNSIKIWD
   WD 2  257-293    -LE-----C-------LKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD
   WD 3  297-333    -GE-----V-------LNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWD
   WD 4  334-376    MASATDITL-------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWS
   WD 5  380-416    -CE-----F-------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD
   WD 6  420-456    -GA-----C-------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD
   WD 7  469-505    -TL-----C-------LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD

   WD40 Template    TGE-----C-------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD