Input parameters:

  Query = ENSMUSP00000104965 (Len=236)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104965, Len=236):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSCSKRCRLGFVKFAQTIFKLITGTLSKDIAWWYYQYQRDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGF 80  
WD40-rpts      (___________________________________________________________________________WD 1

Query       81 KNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDG 160 
WD40-rpts      __________________________________________________________________________)     

Query      161 YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM 236 
WD40-rpts                                                                                  

1 WD40-repeats found in QUERY=ENSMUSP00000104965 (Len=236):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-155      2.92  235.30  0.04119       22.5%     -6.33

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-155    MSSCSKRCRLGFVKFAQTIFKLITGTLSKDIAWWYYQYQRDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD

   WD40 Template    TGECLRTLSGH-------------TSG------------------------VTSVS-----------FS---------------PDGKRL----------------VS-----------GSEDGTIK-------------VW------------D