Input parameters:

  Query = ENSMUSP00000104867 (Len=519)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104867, Len=519):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWKLQRTARRKIRTEEEMLWENIMRVLANGMKQQRNQGSPKELDSVAVTYSSFKSNFVKRLSAEIPVASSPITTRWQLS 80  
WD40-rpts                                      (_____________WD 1_____________)                

Query       81 PARDPESSSSVEEGPPSHTPESLASGLKITPAADTLTLRSHNKNSPKTLSKGSSEVNNSTLRFCKTPLAGDRGWKENLAT 160 
WD40-rpts                                                                                      

Query      161 KGQRCLNQPFSTQKGAQQIDGKMHLCEESRCVRTGCRFGARDEFYLRRFSGVYHSTCQPEVKIHLTGLRNDYYLNTLDWS 240 
WD40-rpts            (_________________WD 2________________)             (_________________WD 3

Query      241 SQNLVAVALGTSVYIWNGQNHSWIENIDLSVCCHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSVVGA 320 
WD40-rpts      ________________)(___________________WD 4___________________)   (_______________

Query      321 LSWNHCTLSSGSRLGRVHHHDVRVAQHRVGTLYHKEAVCSLKWSPDGRLLSSGCNDGLLTIWPHDPGAGVQGLPLKVIPQ 400 
WD40-rpts      _WD 5_______________)   (_________________WD 6________________)(________________

Query      401 STAVKAMEWCPWQSEVLAVGGGVKDGCLHVLDINTGKNIQTPSTQSQICSLIWLPKTKEIATGQGAPKNDVALWTCPTLF 480 
WD40-rpts      ______WD 7_____________________)   (_________________WD 8_________________)   (_

Query      481 RSGGFFGHRDRVLHLSLSPDQTRLFSAAADGTACVWKCC 519 
WD40-rpts      ________________WD 9________________)  

9 WD40-repeats found in QUERY=ENSMUSP00000104867 (Len=519):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    33-64       3.26  249.18  0.02697        2.5%      0.61
  WD 2:  Seg  2   167-205      4.00  279.93  0.01047       10.0%     17.01
  WD 3:  Seg  5   219-257      6.80  395.42  0.00029       15.0%     53.43
  WD 4:  Seg  9   258-301      7.81  437.48  7.9e-05       27.5%     54.39
  WD 5:  Seg 13   305-341      6.76  393.99  0.00030       35.0%     51.90
  WD 6:  Seg 17   345-383      9.51  507.62  9.0e-06       32.5%     51.11
  WD 7:  Seg 21   384-432      5.49  341.37  0.00156       17.5%     40.76
  WD 8:  Seg 24   436-475      5.51  342.21  0.00152       22.5%     46.65
  WD 9:  Seg 28   479-517      9.28  497.91  1.2e-05       37.5%     53.76

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-64     ------------------KQQRNQGSPKELDSVAV---TYSS--FKSNFVKRLSA
   WD 2  167-205    -NQ------P----FSTQKGAQQIDGKMHLCEESR---CVRT--GCRFGARDEFY
   WD 3  219-257    -PE------V----KIHLTGLRNDYYLNTLDWSSQ---NLVA--VALGTSVYIWN
   WD 4  258-301    GQN------HSWIENIDLSVCCHYVSSVTWMREGS---CLAV--GTSEGEVQLWD
   WD 5  305-341    -KK------Q----LRNLHGHLSVVGALSW--NHC---TLSS--GSRLGRVHHHD
   WD 6  345-383    -AQ------H----RVGTLYHKEAVCSLKWSPDGR---LLSS--GCNDGLLTIWP
   WD 7  384-432    HDPGAGVQGL----PLKVIPQSTAVKAMEWCPWQSEVLAVGG--GVKDGCLHVLD
   WD 8  436-475    -GK------N----IQTPSTQ-SQICSLIWLPKTK---EIATGQGAPKNDVALWT
   WD 9  479-517    -LF------R----SGGFFGHRDRVLHLSLSPDQT---RLFS--AAADGTACVWK

   WD40 Template    TGE------C----LRTLSGHTSGVTSVSFSPDGK---RLVS--GSEDGTIKVWD