Input parameters:

  Query = ENSMUSP00000104829 (Len=1092)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000104829, Len=1092):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAHLLKTVVAGCSCPFLSNLGSSKVLPGKRDFVRTLRTHQALWCKSPVKPGIPYKQLTVGVPKEIFQNEKRVALSPAGVQ 80  
WD40-rpts                                                                                      

Query       81 ALVKQGFNVVVESGAGEASKFPDDLYRAAGAQIQGMKEVLASDLVVKVRAPMVNPTLGAHEADFLKPSGTLISFIYPAQN 160 
WD40-rpts                                                                                      

Query      161 PDLLNKLSERKTTVLAMDQVPRVTIAQGYDALSSMANISGYKAVVLAANHFGRFFTGQITAAGKVPPAKILIVGGGVAGL 240 
WD40-rpts                                                                                      

Query      241 ASAGAAKSMGAVVRGFDTRAAALEQFKSLGAEPLEVDLKESGEGQGGYAKEMSKEFIEAEMKLFAQQCKEVDILISTALI 320 
WD40-rpts                                                                                      

Query      321 PGGFQPLSFSVNLCEGNSGACLPVDQAPQPGLSLDDAHAQRCCIHKWCLYYSFDKGAGEMAQWTATVYLHVINKSLKKKK 400 
WD40-rpts                                                                                      

Query      401 KKKKKFHQRSSLELESGTVESHLTRSDCEVPDTRIIFKTPLPENILHEPRSMDVQMQHSLEIDQKEIYLKAIFSLYFSEF 480 
WD40-rpts                                                                                      

Query      481 IDVFTLYSPTLSVLLCLFVFATTAVYRNMVCVWNLAAMIGLYSVYSNTPAFSSPTYSVATSAVPPLSKTGNLALLNYPKT 560 
WD40-rpts                                                                                      

Query      561 KTHAPSAIMTFVNEYNCRGGFLVTQRMLDMFKRPTDPPEYNYLYLLPGGTFVGGYLAALYGGYNIEEIMYLGSGLCCVGA 640 
WD40-rpts                                                                                      

Query      641 LGGLSTQGTARLGNALGMIGVAGGLAATLGGLKPDPQLLAQMSGAMAMGGTIGLTIAKRIQISDLPQLVAAFHSLVGLAA 720 
WD40-rpts                                                                                      

Query      721 VLTCMAEYIVEYPHFAMDATSNFTKIVAYLGTYIGGVTFSGSLVAYGKLQGILKSAPLLLPGRHALNAGLLAASVGGIIP 800 
WD40-rpts                                                                                      

Query      801 FMADPSFTTGITCLGSVSALSTLMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSGAILSY 880 
WD40-rpts                                                                                      

Query      881 IMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAVEMIREANSIVITPGYGLCAAKAQYPIADLVKMLTEQ 960 
WD40-rpts                                                                                     (

Query      961 GKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINSDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK 1040
WD40-rpts      _____________________________WD 1_____________________________)                 

Query     1041 SKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESYQK 1092
WD40-rpts                                                          

1 WD40-repeats found in QUERY=ENSMUSP00000104829 (Len=1092):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   960-1023     2.96  237.08  0.03902       25.0%     -2.40

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  960-1023   QGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINSDFPDTDLVLVIGANDTVNSAAQ

   WD40 Template    TGECLR--------TLSGHT------SGVT----------SVSFSPDGKRLVSGSEDGTIKVWD